Variant report

Variant	rs7681100
Chromosome Location	chr4:86598768-86598769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10003669	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11937452	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11943623	0.86[ASN][1000 genomes]
rs12502332	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13103706	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13106652	0.92[ASN][1000 genomes]
rs13123541	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13129615	0.82[ASN][1000 genomes]
rs13131183	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13149991	0.82[ASN][1000 genomes]
rs1482089	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1564559	0.86[ASN][1000 genomes]
rs2062100	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2869361	0.86[ASN][1000 genomes]
rs4693120	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4693711	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4693712	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4693718	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4693719	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4693720	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6531839	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6815397	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6849280	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7664042	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs766570	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7681661	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688899	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7694594	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs979337	0.80[ASN][1000 genomes]
rs9994722	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7681100	ARHGAP24	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86589000-86601600	Weak transcription	HSMMtube	muscle
2	chr4:86590000-86604600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr4:86591400-86619400	Weak transcription	Pancreas	Pancrea
4	chr4:86594400-86601400	Weak transcription	Spleen	Spleen
5	chr4:86594400-86601600	Weak transcription	HSMM	muscle
6	chr4:86594600-86600000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:86595000-86600000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr4:86595200-86599200	Enhancers	Fetal Muscle Leg	muscle
9	chr4:86595200-86600000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr4:86595400-86598800	Enhancers	Fetal Stomach	stomach
11	chr4:86596200-86599200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr4:86596600-86601600	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:86597200-86600600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:86597200-86602400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:86597200-86603600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:86597400-86599400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:86597400-86599600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:86597400-86609000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:86597600-86598800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:86597600-86598800	Enhancers	Brain Substantia Nigra	brain
21	chr4:86597600-86599200	Strong transcription	Primary B cells from cord blood	blood
22	chr4:86597600-86599200	Genic enhancers	Primary B cells from peripheral blood	blood
23	chr4:86597600-86599200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr4:86597800-86598800	Enhancers	Brain Anterior Caudate	brain
25	chr4:86597800-86598800	Enhancers	Fetal Heart	heart
26	chr4:86597800-86600600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:86598000-86599200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:86598000-86599200	Enhancers	Fetal Muscle Trunk	muscle
29	chr4:86598000-86599800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:86598000-86600000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr4:86598000-86600200	Enhancers	NHDF-Ad	bronchial
32	chr4:86598200-86598800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:86598200-86598800	Enhancers	Brain Germinal Matrix	brain
34	chr4:86598200-86602800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr4:86598200-86603400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr4:86598400-86603000	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links