Variant report

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10015645	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10518214	1.00[ASN][1000 genomes]
rs1080690	0.92[AFR][1000 genomes]
rs11098609	0.94[ASW][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs12501238	0.94[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs13113216	1.00[ASN][1000 genomes]
rs1471729	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17003679	1.00[ASN][1000 genomes]
rs28455975	1.00[ASN][1000 genomes]
rs28460261	1.00[ASN][1000 genomes]
rs28546466	1.00[ASN][1000 genomes]
rs28651876	1.00[ASN][1000 genomes]
rs28656884	1.00[ASN][1000 genomes]
rs28688839	1.00[ASN][1000 genomes]
rs28704600	1.00[ASN][1000 genomes]
rs28727508	1.00[ASN][1000 genomes]
rs34078327	1.00[ASN][1000 genomes]
rs34655076	1.00[ASN][1000 genomes]
rs4246716	1.00[ASN][1000 genomes]
rs4246717	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4246718	0.94[ASW][hapmap];0.88[LWK][hapmap];0.96[YRI][hapmap]
rs4302482	1.00[YRI][hapmap]
rs4413431	1.00[ASN][1000 genomes]
rs4975165	1.00[JPT][hapmap]
rs4988619	0.81[AFR][1000 genomes]
rs59072456	1.00[ASN][1000 genomes]
rs6816121	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6821709	1.00[ASN][1000 genomes]
rs6826553	0.87[AFR][1000 genomes]
rs6853888	1.00[ASN][1000 genomes]
rs6858130	1.00[ASN][1000 genomes]
rs72662701	1.00[ASN][1000 genomes]
rs72664018	1.00[ASN][1000 genomes]
rs73828224	1.00[ASN][1000 genomes]
rs73828232	1.00[ASN][1000 genomes]
rs7659766	0.96[YRI][hapmap]
rs9790513	1.00[ASN][1000 genomes]
rs982992	1.00[ASN][1000 genomes]
rs9991698	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80165400-80194000	Weak transcription	Aorta	Aorta
2	chr4:80184600-80184800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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