Variant report

Variant	rs7682001
Chromosome Location	chr4:107276380-107276381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107275880..107279456-chr4:107281523..107285039,4	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10009873	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10010622	0.90[AMR][1000 genomes]
rs10010712	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10026011	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10033060	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11544776	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11729801	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28408532	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28432701	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28600674	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28615207	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28648796	0.90[AMR][1000 genomes]
rs28668834	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28722963	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28786397	0.90[AMR][1000 genomes]
rs28786712	0.90[AMR][1000 genomes]
rs28843476	0.90[AMR][1000 genomes]
rs28848568	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28852980	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28890246	0.90[AMR][1000 genomes]
rs6820647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356173	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9996386	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107258600-107281400	Weak transcription	Fetal Heart	heart
2	chr4:107260200-107276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:107260200-107276800	Weak transcription	Psoas Muscle	Psoas
4	chr4:107260400-107276600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:107260800-107276600	Weak transcription	Pancreas	Pancrea
6	chr4:107260800-107285400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:107261800-107276600	Weak transcription	Ovary	ovary
8	chr4:107262200-107276600	Weak transcription	Brain Anterior Caudate	brain
9	chr4:107266600-107276400	Weak transcription	NHLF	lung
10	chr4:107268400-107276600	Weak transcription	Gastric	stomach
11	chr4:107270200-107276400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr4:107270200-107276400	Weak transcription	K562	blood
13	chr4:107270200-107276600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr4:107270200-107277200	Weak transcription	A549	lung
15	chr4:107270200-107280400	Weak transcription	NH-A	brain
16	chr4:107270400-107277000	Weak transcription	GM12878-XiMat	blood
17	chr4:107270400-107277600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:107270400-107280000	Weak transcription	Fetal Kidney	kidney
19	chr4:107270600-107286200	Weak transcription	HepG2	liver
20	chr4:107270800-107276400	Weak transcription	Liver	Liver
21	chr4:107270800-107276600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:107270800-107277800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:107270800-107283200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr4:107270800-107290600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr4:107271000-107276400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr4:107271200-107278200	Weak transcription	Fetal Muscle Leg	muscle
27	chr4:107271200-107286400	Weak transcription	Fetal Intestine Large	intestine
28	chr4:107271400-107278600	Weak transcription	NHDF-Ad	bronchial
29	chr4:107271800-107276400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:107272200-107280400	Weak transcription	HSMM	muscle
31	chr4:107272800-107276400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr4:107272800-107280000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:107273000-107276600	Weak transcription	Adipose Nuclei	Adipose
34	chr4:107273000-107276800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr4:107273000-107280200	Weak transcription	NHEK	skin
36	chr4:107273000-107286600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:107273000-107286600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:107273200-107276800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr4:107273200-107277600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr4:107273200-107280200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:107273400-107282000	Weak transcription	Colon Smooth Muscle	Colon
42	chr4:107274000-107276400	Enhancers	Osteobl	bone
43	chr4:107274000-107276800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:107274600-107276400	Weak transcription	Aorta	Aorta
45	chr4:107274600-107278600	Weak transcription	Left Ventricle	heart
46	chr4:107274800-107276600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr4:107275000-107279000	Weak transcription	Brain Hippocampus Middle	brain
48	chr4:107275800-107276400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr4:107276000-107279600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr4:107276200-107276400	Enhancers	HUES64 Cell Line	embryonic stem cell

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