Variant report

Variant	rs7682945
Chromosome Location	chr4:86739441-86739442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10014188	0.99[ASN][1000 genomes]
rs10029846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097076	0.82[AMR][1000 genomes]
rs1109822	0.81[AMR][1000 genomes]
rs4693740	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6815441	0.83[ASN][1000 genomes]
rs6844781	0.83[AMR][1000 genomes]
rs745890	0.99[ASN][1000 genomes]
rs882639	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86728200-86747200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:86729000-86744600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:86729400-86747400	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:86729800-86743600	Weak transcription	HSMMtube	muscle
5	chr4:86729800-86744600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:86730200-86741400	Weak transcription	HSMM	muscle
7	chr4:86731000-86739600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:86734400-86741000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr4:86734600-86741200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:86734600-86741200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:86734600-86743000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:86734600-86743200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:86734600-86743400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:86734600-86743400	Weak transcription	Aorta	Aorta
15	chr4:86734600-86743400	Weak transcription	Osteobl	bone
16	chr4:86736200-86748600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:86736400-86739600	Weak transcription	Fetal Stomach	stomach
18	chr4:86737000-86740600	Weak transcription	HUVEC	blood vessel
19	chr4:86737400-86741200	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:86737600-86744600	Weak transcription	K562	blood
21	chr4:86737600-86763200	Weak transcription	Primary B cells from cord blood	blood
22	chr4:86737800-86741200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:86738800-86741200	Weak transcription	Fetal Kidney	kidney
24	chr4:86739200-86739800	Enhancers	Primary hematopoietic stem cells	blood
25	chr4:86739200-86740200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr4:86739400-86739600	Enhancers	Fetal Brain Male	brain
27	chr4:86739400-86740200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr4:86739400-86740200	Enhancers	H9 Cell Line	embryonic stem cell
29	chr4:86739400-86740200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr4:86739400-86740200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr4:86739400-86740200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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