Variant report

Variant	rs7683733
Chromosome Location	chr4:86709747-86709748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12710823	0.80[GIH][hapmap]
rs13118915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17010925	0.94[ASW][hapmap]
rs34057092	0.81[ASN][1000 genomes]
rs34917858	0.84[ASN][1000 genomes]
rs4693737	0.92[ASN][1000 genomes]
rs7662174	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7670874	0.91[LWK][hapmap]
rs7684607	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7688875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86701000-86728800	Weak transcription	Right Ventricle	heart
2	chr4:86701200-86715600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86702200-86709800	Weak transcription	Fetal Kidney	kidney
4	chr4:86702200-86711200	Weak transcription	Fetal Lung	lung
5	chr4:86704000-86715600	Enhancers	Osteobl	bone
6	chr4:86704000-86719800	Enhancers	NHDF-Ad	bronchial
7	chr4:86704400-86709800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:86704400-86710000	Enhancers	NHLF	lung
9	chr4:86705000-86712600	Weak transcription	Primary B cells from cord blood	blood
10	chr4:86705400-86711200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:86705800-86710000	Weak transcription	Adipose Nuclei	Adipose
12	chr4:86705800-86710200	Weak transcription	Psoas Muscle	Psoas
13	chr4:86705800-86710800	Weak transcription	Fetal Stomach	stomach
14	chr4:86705800-86719600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:86706400-86712800	Enhancers	HUVEC	blood vessel
16	chr4:86706600-86711800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:86707600-86710200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:86708400-86718200	Weak transcription	Aorta	Aorta
19	chr4:86708600-86710000	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:86708800-86710400	Enhancers	Fetal Muscle Leg	muscle
21	chr4:86709000-86710000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:86709000-86711600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:86709000-86714400	Weak transcription	NH-A	brain
24	chr4:86709000-86727000	Weak transcription	HSMMtube	muscle
25	chr4:86709200-86727000	Weak transcription	HSMM	muscle
26	chr4:86709400-86709800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:86709400-86710200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:86709400-86710800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:86709400-86711600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:86709400-86712600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr4:86709400-86712600	Weak transcription	Left Ventricle	heart
32	chr4:86709400-86712600	Weak transcription	Right Atrium	heart
33	chr4:86709400-86712600	Weak transcription	Spleen	Spleen
34	chr4:86709400-86713600	Weak transcription	Muscle Satellite Cultured Cells	--

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