Variant report
Variant | rs7684329 |
---|---|
Chromosome Location | chr4:33747424-33747425 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:33741662..33743292-chr4:33747301..33749148,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10011550 | 0.98[ASN][1000 genomes] |
rs10021740 | 0.89[ASN][1000 genomes] |
rs10025016 | 0.89[ASN][1000 genomes] |
rs10030710 | 0.89[ASN][1000 genomes] |
rs10033461 | 0.89[ASN][1000 genomes] |
rs10033782 | 0.80[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10034901 | 0.89[ASN][1000 genomes] |
rs10050065 | 0.98[ASN][1000 genomes] |
rs10470879 | 0.89[ASN][1000 genomes] |
rs11945628 | 0.89[ASN][1000 genomes] |
rs12640941 | 0.98[ASN][1000 genomes] |
rs12642628 | 0.90[ASN][1000 genomes] |
rs13102670 | 0.89[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap] |
rs13110392 | 0.89[ASN][1000 genomes] |
rs13111438 | 0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs13112341 | 0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs13113238 | 0.98[ASN][1000 genomes] |
rs13131261 | 0.89[ASN][1000 genomes] |
rs13136846 | 0.89[ASN][1000 genomes] |
rs13137090 | 0.89[ASN][1000 genomes] |
rs13139622 | 0.89[ASN][1000 genomes] |
rs13142161 | 0.89[ASN][1000 genomes] |
rs13142365 | 0.89[ASN][1000 genomes] |
rs13147878 | 0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs13150067 | 0.89[ASN][1000 genomes] |
rs1373494 | 0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1378039 | 0.89[ASN][1000 genomes] |
rs1444377 | 0.89[ASN][1000 genomes] |
rs1444378 | 0.89[ASN][1000 genomes] |
rs1596581 | 0.89[ASN][1000 genomes] |
rs16989167 | 0.89[ASN][1000 genomes] |
rs16989187 | 0.89[ASN][1000 genomes] |
rs16989190 | 0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs16995875 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2120677 | 0.96[ASN][1000 genomes] |
rs2166108 | 0.82[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs2166109 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2166110 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2338361 | 0.98[ASN][1000 genomes] |
rs28394002 | 0.96[ASN][1000 genomes] |
rs28489645 | 0.91[ASN][1000 genomes] |
rs28558465 | 0.89[ASN][1000 genomes] |
rs28588941 | 0.89[ASN][1000 genomes] |
rs28613726 | 0.89[ASN][1000 genomes] |
rs28661791 | 0.89[ASN][1000 genomes] |
rs28696054 | 0.96[ASN][1000 genomes] |
rs28744428 | 0.95[ASN][1000 genomes] |
rs28814696 | 0.89[ASN][1000 genomes] |
rs28819970 | 0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs28830587 | 0.89[ASN][1000 genomes] |
rs28848573 | 0.89[ASN][1000 genomes] |
rs28855206 | 0.89[ASN][1000 genomes] |
rs28859331 | 0.89[ASN][1000 genomes] |
rs28872587 | 0.89[ASN][1000 genomes] |
rs28877976 | 0.89[ASN][1000 genomes] |
rs28880369 | 0.89[ASN][1000 genomes] |
rs28884892 | 0.89[ASN][1000 genomes] |
rs28893243 | 0.89[ASN][1000 genomes] |
rs34003616 | 0.88[ASN][1000 genomes] |
rs34151233 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs34365744 | 0.89[ASN][1000 genomes] |
rs35041609 | 0.85[AMR][1000 genomes] |
rs35107776 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35437107 | 0.88[ASN][1000 genomes] |
rs35639548 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35664299 | 0.89[ASN][1000 genomes] |
rs36051778 | 0.90[ASN][1000 genomes] |
rs3863828 | 0.96[ASN][1000 genomes] |
rs3910837 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4444815 | 0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4475134 | 0.89[ASN][1000 genomes] |
rs57420599 | 0.88[ASN][1000 genomes] |
rs59660596 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs67441316 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs67906834 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6810417 | 0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6858079 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs71602006 | 0.89[ASN][1000 genomes] |
rs73127077 | 0.89[ASN][1000 genomes] |
rs7660710 | 0.87[ASN][1000 genomes] |
rs7661640 | 0.89[ASN][1000 genomes] |
rs7665615 | 0.96[ASN][1000 genomes] |
rs7667563 | 0.89[ASN][1000 genomes] |
rs7674046 | 0.98[ASN][1000 genomes] |
rs7688152 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7691370 | 0.81[ASN][1000 genomes] |
rs7693464 | 0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7694031 | 0.89[ASN][1000 genomes] |
rs7694226 | 0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9990714 | 0.88[ASN][1000 genomes] |
rs9992483 | 0.89[ASN][1000 genomes] |
rs9993419 | 0.89[ASN][1000 genomes] |
rs9995588 | 0.89[ASN][1000 genomes] |
rs9995797 | 0.89[ASN][1000 genomes] |
rs9997046 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1012155 | chr4:33203447-33798612 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv537059 | chr4:33203447-33798612 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv1005061 | chr4:33366334-33894491 | Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv878876 | chr4:33653757-34000455 | Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | esv1819154 | chr4:33658459-33774322 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:33747400-33747600 | Active TSS | Dnd41 | blood |