Variant report

Variant	rs7684556
Chromosome Location	chr4:102179765-102179766
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102178495..102180212-chr4:102267850..102269476,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138814	Chromatin interaction
ENSG00000254531	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11946138	0.94[ASN][1000 genomes]
rs6532923	0.94[ASN][1000 genomes]
rs6819434	0.81[ASN][1000 genomes]
rs6836243	0.89[ASN][1000 genomes]
rs6841711	0.94[ASN][1000 genomes]
rs7698954	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102159200-102179800	Weak transcription	Psoas Muscle	Psoas
2	chr4:102174000-102181200	Weak transcription	Brain Anterior Caudate	brain
3	chr4:102174200-102179800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:102174200-102180000	Weak transcription	Left Ventricle	heart
5	chr4:102174200-102181000	Weak transcription	Adipose Nuclei	Adipose
6	chr4:102174200-102186000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:102174400-102180000	Weak transcription	NHDF-Ad	bronchial
8	chr4:102174400-102180600	Weak transcription	NHLF	lung
9	chr4:102174400-102185800	Weak transcription	HMEC	breast
10	chr4:102174600-102179800	Weak transcription	Ovary	ovary
11	chr4:102175200-102180000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:102175400-102179800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:102175800-102180400	Weak transcription	NH-A	brain
14	chr4:102176200-102181000	Weak transcription	Fetal Kidney	kidney
15	chr4:102176400-102180400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:102176600-102179800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr4:102177800-102180200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:102177800-102181000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:102177800-102181600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:102177800-102185000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:102178000-102179800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:102178000-102179800	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:102178000-102179800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:102178000-102181800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr4:102178000-102186600	Weak transcription	Brain Substantia Nigra	brain
26	chr4:102178200-102180000	Weak transcription	Brain Hippocampus Middle	brain
27	chr4:102178200-102182200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:102178200-102183000	Weak transcription	Stomach Mucosa	stomach
29	chr4:102178200-102183800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr4:102179000-102180000	Weak transcription	Fetal Heart	heart
31	chr4:102179000-102180600	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr4:102179000-102186800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr4:102179200-102181800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr4:102179400-102180000	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr4:102179400-102180200	Enhancers	Primary T cells from cord blood	blood
36	chr4:102179400-102180400	Enhancers	Small Intestine	intestine
37	chr4:102179400-102180600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr4:102179400-102180600	Enhancers	Primary hematopoietic stem cells	blood
39	chr4:102179400-102180600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr4:102179400-102180600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:102179400-102180600	Enhancers	Pancreas	Pancrea
42	chr4:102179400-102181200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr4:102179400-102181200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr4:102179400-102181200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr4:102179400-102181200	Enhancers	Aorta	Aorta
46	chr4:102179400-102181400	Enhancers	Primary B cells from peripheral blood	blood
47	chr4:102179400-102181400	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr4:102179400-102181600	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr4:102179600-102180200	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr4:102179600-102180400	Enhancers	GM12878-XiMat	blood

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