Variant report

Variant	rs7685260
Chromosome Location	chr4:86521449-86521450
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr4:86521294-86521745	ECC-1	luminal epithelium:	n/a	n/a
2	NFIC	chr4:86521226-86521780	ECC-1	luminal epithelium:	n/a	n/a
3	EP300	chr4:86521170-86521900	ECC-1	luminal epithelium:	n/a	n/a
4	NR3C1	chr4:86521306-86521683	ECC-1	luminal epithelium:	n/a	n/a
5	MAX	chr4:86521343-86521827	ECC-1	luminal epithelium:	n/a	n/a
6	NR3C1	chr4:86521408-86521669	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
ARHGAP24	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs28429534	1.00[AMR][1000 genomes]
rs28871342	1.00[AMR][1000 genomes]
rs6531840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6813231	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6814544	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6815200	1.00[AMR][1000 genomes]
rs6816066	1.00[AMR][1000 genomes]
rs6827386	1.00[AMR][1000 genomes]
rs6827564	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6858619	1.00[AMR][1000 genomes]
rs6858779	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7654408	1.00[AMR][1000 genomes]
rs7657112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7657712	1.00[AMR][1000 genomes]
rs7662585	1.00[AMR][1000 genomes]
rs7667098	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7671828	1.00[AMR][1000 genomes]
rs7672626	1.00[AMR][1000 genomes]
rs7672782	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7673815	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7685271	1.00[AMR][1000 genomes]
rs7688778	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7689198	1.00[AMR][1000 genomes]
rs7689606	1.00[AMR][1000 genomes]
rs7690114	1.00[AMR][1000 genomes]
rs7690209	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86513000-86522600	Weak transcription	Primary B cells from cord blood	blood
2	chr4:86517800-86542200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:86518000-86524400	Weak transcription	HSMM	muscle
4	chr4:86518600-86524800	Weak transcription	Fetal Heart	heart
5	chr4:86520200-86521800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:86520400-86525200	Weak transcription	Gastric	stomach
7	chr4:86520400-86525200	Weak transcription	Left Ventricle	heart
8	chr4:86521000-86521600	Enhancers	Right Ventricle	heart
9	chr4:86521200-86521600	Enhancers	HSMMtube	muscle
10	chr4:86521200-86522000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:86521400-86523800	Weak transcription	Primary B cells from peripheral blood	blood

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