Variant report

Variant	rs7685704
Chromosome Location	chr4:86845548-86845549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr4:86845384-86845571	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr4:86845523-86845852	MCF10A-Er-Src	breast:	n/a	chr4:86845647-86845654

Variant related genes	Relation type
ARHGAP24	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10006104	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10018236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10026288	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1016510	0.95[EUR][1000 genomes]
rs11930286	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12651053	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1467072	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1473009	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1473011	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1510580	0.87[EUR][1000 genomes]
rs1510582	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17011172	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17011185	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1848917	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1961436	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28566811	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28572751	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28713621	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2904082	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2904083	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs346510	0.95[ASN][1000 genomes]
rs346513	0.88[ASN][1000 genomes]
rs346517	0.96[ASN][1000 genomes]
rs61561733	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6531877	0.87[EUR][1000 genomes]
rs6531882	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6810816	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6811531	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6819930	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6820175	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6824722	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6850630	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6851522	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7654702	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7666429	0.95[EUR][1000 genomes]
rs7669712	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7690939	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7692633	0.87[EUR][1000 genomes]
rs7692989	0.87[EUR][1000 genomes]
rs7693039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7699391	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9307011	0.83[EUR][1000 genomes]
rs9307013	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9790433	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86808200-86846000	Weak transcription	HUVEC	blood vessel
2	chr4:86827600-86850600	Weak transcription	Spleen	Spleen
3	chr4:86831200-86851000	Weak transcription	Aorta	Aorta
4	chr4:86836000-86848800	Weak transcription	Fetal Kidney	kidney
5	chr4:86839200-86846000	Weak transcription	HSMM	muscle
6	chr4:86840600-86849800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:86841400-86849400	Weak transcription	A549	lung
8	chr4:86841600-86848800	Weak transcription	Stomach Mucosa	stomach
9	chr4:86843000-86849200	Weak transcription	Left Ventricle	heart
10	chr4:86843000-86850600	Weak transcription	Psoas Muscle	Psoas
11	chr4:86843200-86849000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr4:86843200-86849200	Weak transcription	Pancreas	Pancrea
13	chr4:86843200-86849600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:86843200-86850000	Weak transcription	HSMMtube	muscle
15	chr4:86843200-86852400	Weak transcription	Esophagus	oesophagus
16	chr4:86843800-86847000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr4:86843800-86848600	Strong transcription	Primary B cells from cord blood	blood
18	chr4:86844200-86846000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:86844200-86847000	Strong transcription	Fetal Muscle Leg	muscle
20	chr4:86844400-86847400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:86844400-86853800	Weak transcription	Gastric	stomach
22	chr4:86844800-86846600	Strong transcription	NHDF-Ad	bronchial
23	chr4:86844800-86850600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr4:86845000-86846600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:86845000-86847000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr4:86845000-86849200	Weak transcription	Adipose Nuclei	Adipose
27	chr4:86845000-86849800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:86845400-86847400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:86845400-86849200	Weak transcription	Primary monocytes fromperipheralblood	blood

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