Variant report

Variant	rs7686507
Chromosome Location	chr4:86640176-86640177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17010851	1.00[YRI][hapmap]
rs35201853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86632000-86647000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:86633600-86644800	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:86636600-86643600	Enhancers	NHDF-Ad	bronchial
4	chr4:86637800-86641400	Weak transcription	HSMM	muscle
5	chr4:86637800-86641600	Weak transcription	A549	lung
6	chr4:86638000-86646600	Weak transcription	Small Intestine	intestine
7	chr4:86638200-86646600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:86638600-86641600	Weak transcription	HSMMtube	muscle
9	chr4:86638800-86641400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:86638800-86642000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr4:86638800-86643400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr4:86638800-86643600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:86639000-86643000	Weak transcription	Primary B cells from cord blood	blood
14	chr4:86639000-86644800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr4:86639200-86640400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:86639200-86641600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:86639200-86641600	Weak transcription	Fetal Heart	heart
18	chr4:86639400-86641600	Weak transcription	NHEK	skin
19	chr4:86639400-86645400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:86639400-86646800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:86639600-86641600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:86639600-86645400	Weak transcription	NHLF	lung
23	chr4:86639600-86646200	Weak transcription	Fetal Lung	lung
24	chr4:86639800-86641600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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