Variant report

Variant	rs7690137
Chromosome Location	chr4:87406185-87406186
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87405528..87406298-chr4:87417205..87417906,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10516775	0.87[EUR][1000 genomes]
rs10516776	0.87[EUR][1000 genomes]
rs1344260	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011953	0.87[EUR][1000 genomes]
rs17011954	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17011956	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17011959	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17011962	0.87[EUR][1000 genomes]
rs17011965	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17011966	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17011968	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17011978	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17011981	0.87[EUR][1000 genomes]
rs17011984	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17011985	0.87[EUR][1000 genomes]
rs17011988	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17011994	0.87[EUR][1000 genomes]
rs17012007	0.87[EUR][1000 genomes]
rs17012009	0.87[EUR][1000 genomes]
rs17012010	0.87[EUR][1000 genomes]
rs17012012	0.87[EUR][1000 genomes]
rs17012018	0.87[EUR][1000 genomes]
rs17419783	0.87[EUR][1000 genomes]
rs2170427	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2200052	0.87[EUR][1000 genomes]
rs2219993	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs28653505	0.90[EUR][1000 genomes]
rs2869442	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2869443	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2904103	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34155193	0.87[EUR][1000 genomes]
rs35434858	0.87[EUR][1000 genomes]
rs4561893	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4604024	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4627823	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61121590	0.87[EUR][1000 genomes]
rs61344492	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72870675	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72872208	0.87[EUR][1000 genomes]
rs72872209	0.87[EUR][1000 genomes]
rs980637	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs980638	1.00[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87400800-87406800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:87403400-87407200	Enhancers	Dnd41	blood
3	chr4:87403600-87406200	Enhancers	Fetal Thymus	thymus
4	chr4:87404000-87406800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:87404200-87406200	Enhancers	Thymus	Thymus
6	chr4:87404600-87406400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:87404600-87407000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:87404600-87407000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:87404600-87414800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:87404800-87406400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:87405000-87406400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:87405000-87407200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:87405000-87418400	Weak transcription	Fetal Kidney	kidney
14	chr4:87405600-87406400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr4:87405800-87407000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:87405800-87411400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:87405800-87412400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr4:87405800-87413600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:87405800-87414600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr4:87406000-87406800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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