Variant report

Variant	rs7690311
Chromosome Location	chr4:81488340-81488341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17004897	1.00[AMR][1000 genomes]
rs17004938	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17004949	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17004951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17004953	0.81[AFR][1000 genomes]
rs17004954	0.81[AFR][1000 genomes]
rs17004981	1.00[EUR][1000 genomes]
rs1874335	1.00[AMR][1000 genomes]
rs56015804	1.00[EUR][1000 genomes]
rs56062404	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57326646	1.00[AMR][1000 genomes]
rs58112950	1.00[AMR][1000 genomes]
rs58711748	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59437917	1.00[EUR][1000 genomes]
rs59718772	1.00[EUR][1000 genomes]
rs59881454	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60366641	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60660007	1.00[AMR][1000 genomes]
rs60770229	0.80[AFR][1000 genomes]
rs61327507	1.00[EUR][1000 genomes]
rs6816294	0.92[AFR][1000 genomes]
rs6847820	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73829105	1.00[EUR][1000 genomes]
rs73829106	1.00[EUR][1000 genomes]
rs73829294	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832427	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832428	1.00[AMR][1000 genomes]
rs73832429	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7656162	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7662939	1.00[EUR][1000 genomes]
rs7665568	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7669743	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7693520	1.00[EUR][1000 genomes]
rs7699161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs966860	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs966861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81487400-81488400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:81487600-81488400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:81487600-81488400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:81487600-81488400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:81487600-81488400	Active TSS	Duodenum Mucosa	Duodenum
6	chr4:81487600-81488400	Active TSS	Ovary	ovary
7	chr4:81487800-81488400	Active TSS	Osteobl	bone
8	chr4:81488200-81488400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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