Variant report

Variant	rs7690761
Chromosome Location	chr4:144208762-144208763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10012713	0.93[ASN][1000 genomes]
rs10028909	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12643013	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13118846	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13129434	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13136521	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13137362	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1532981	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17686361	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28589653	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs300890	0.82[AMR][1000 genomes]
rs300891	0.81[AMR][1000 genomes]
rs300892	0.81[AMR][1000 genomes]
rs300893	0.81[AMR][1000 genomes]
rs300895	0.81[AMR][1000 genomes]
rs300904	0.81[AMR][1000 genomes]
rs300905	0.82[AMR][1000 genomes]
rs300943	0.95[ASN][1000 genomes]
rs300946	0.95[ASN][1000 genomes]
rs300947	0.95[ASN][1000 genomes]
rs300951	0.88[ASN][1000 genomes]
rs300953	0.88[ASN][1000 genomes]
rs3846235	0.80[ASN][1000 genomes]
rs592349	0.93[ASN][1000 genomes]
rs62337488	0.81[AMR][1000 genomes]
rs624189	0.82[AMR][1000 genomes]
rs6537152	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6537153	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs666542	0.93[ASN][1000 genomes]
rs6823434	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6840603	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7655782	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv880177	chr4:144174773-144214082	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144206000-144210200	Enhancers	Fetal Stomach	stomach
2	chr4:144206200-144209000	Enhancers	Duodenum Smooth Muscle	Duodenum
3	chr4:144206600-144208800	Enhancers	Fetal Lung	lung
4	chr4:144206800-144209000	Enhancers	Fetal Brain Male	brain
5	chr4:144206800-144209000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:144206800-144209200	Enhancers	Rectal Smooth Muscle	rectum
7	chr4:144207000-144208800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:144207000-144208800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:144207000-144209000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:144207000-144209000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:144207000-144209000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr4:144207200-144209000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:144207200-144209000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:144207200-144209000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr4:144207200-144209000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:144207200-144209000	Enhancers	Fetal Muscle Leg	muscle
17	chr4:144207400-144208800	Enhancers	HSMM	muscle
18	chr4:144207400-144209000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:144207400-144209000	Enhancers	Esophagus	oesophagus
20	chr4:144207600-144208800	Weak transcription	Psoas Muscle	Psoas
21	chr4:144207600-144209000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:144207800-144208800	Enhancers	HSMMtube	muscle
23	chr4:144208000-144208800	Flanking Active TSS	NHEK	skin
24	chr4:144208000-144209600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:144208200-144208800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:144208200-144208800	Flanking Active TSS	HMEC	breast
27	chr4:144208200-144209000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr4:144208200-144209000	Enhancers	Fetal Thymus	thymus
29	chr4:144208200-144209600	Enhancers	NHLF	lung
30	chr4:144208400-144209000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr4:144208400-144209000	Enhancers	Ovary	ovary
32	chr4:144208400-144209800	Enhancers	Adipose Nuclei	Adipose
33	chr4:144208400-144209800	Enhancers	NHDF-Ad	bronchial
34	chr4:144208400-144214000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr4:144208600-144208800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:144208600-144208800	Enhancers	Colon Smooth Muscle	Colon
37	chr4:144208600-144209000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:144208600-144209000	Enhancers	Right Atrium	heart
39	chr4:144208600-144209000	Enhancers	NH-A	brain
40	chr4:144208600-144209000	Flanking Active TSS	Osteobl	bone
41	chr4:144208600-144209600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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