Variant report

Variant	rs7692128
Chromosome Location	chr4:142146406-142146407
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:142142382..142144956-chr4:142145534..142149022,4	MCF-7	breast:
2	chr4:142145239..142147400-chr4:142251426..142253615,3	K562	blood:
3	chr4:142136198..142137855-chr4:142145014..142147279,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17006871	0.82[YRI][hapmap]
rs3897805	0.83[YRI][hapmap]
rs7699835	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757959	chr4:142065661-142367951	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759287	chr4:142065661-142367951	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142142600-142159400	Weak transcription	Spleen	Spleen
2	chr4:142142800-142150400	Weak transcription	Ovary	ovary
3	chr4:142142800-142150600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:142142800-142150600	Weak transcription	Esophagus	oesophagus
5	chr4:142142800-142150600	Weak transcription	Gastric	stomach
6	chr4:142142800-142150600	Weak transcription	Lung	lung
7	chr4:142142800-142150600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:142142800-142150800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:142142800-142151000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:142142800-142154800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:142142800-142154800	Weak transcription	Pancreas	Pancrea
12	chr4:142143000-142149400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr4:142143000-142150600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:142143000-142150600	Weak transcription	Thymus	Thymus
15	chr4:142143000-142151800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:142143000-142152800	Weak transcription	Brain Germinal Matrix	brain
17	chr4:142143000-142154600	Weak transcription	Colonic Mucosa	Colon
18	chr4:142143200-142147800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr4:142143200-142147800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:142143200-142150800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:142143200-142153000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr4:142143200-142153200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:142143200-142154800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:142143200-142157000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr4:142143400-142150600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr4:142143400-142150600	Weak transcription	Aorta	Aorta
27	chr4:142143400-142154800	Weak transcription	Fetal Stomach	stomach
28	chr4:142143400-142155000	Weak transcription	Fetal Brain Female	brain
29	chr4:142143400-142156400	Weak transcription	Stomach Mucosa	stomach
30	chr4:142143600-142146800	Weak transcription	Brain Substantia Nigra	brain
31	chr4:142143600-142146800	Weak transcription	Psoas Muscle	Psoas
32	chr4:142143600-142147200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr4:142143600-142148000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr4:142143600-142149600	Weak transcription	A549	lung
35	chr4:142143600-142150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:142143600-142154400	Weak transcription	HSMMtube	muscle
37	chr4:142143600-142154800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr4:142143600-142154800	Weak transcription	Fetal Intestine Small	intestine
39	chr4:142143600-142156400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:142143600-142156400	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr4:142143800-142147800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr4:142143800-142148400	Strong transcription	NH-A	brain
43	chr4:142143800-142150600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr4:142143800-142150600	Weak transcription	Brain Anterior Caudate	brain
45	chr4:142143800-142150600	Weak transcription	Colon Smooth Muscle	Colon
46	chr4:142143800-142150600	Weak transcription	Fetal Brain Male	brain
47	chr4:142143800-142156600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr4:142143800-142156800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr4:142143800-142157000	Strong transcription	Primary B cells from peripheral blood	blood
50	chr4:142143800-142158800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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