Variant report

Variant	rs7692813
Chromosome Location	chr4:144099093-144099094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144094488..144096347-chr4:144097558..144099799,2	MCF-7	breast:
2	chr4:144097632..144100822-chr4:144104140..144107231,5	MCF-7	breast:
3	chr4:144096235..144099412-chr4:144099530..144102386,3	K562	blood:
4	chr4:144085101..144086680-chr4:144098619..144100962,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INPP4B-2	chr4:144098813-144099249	ENSG00000250326.1

Variant related genes	Relation type
ENSG00000250326	Chromatin interaction
ENSG00000170185	Chromatin interaction

Extended variants
information (count: 185 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:185)

rs_ID	r²[population]
rs10000911	0.95[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10001113	0.90[ASN][1000 genomes]
rs10002867	0.90[ASN][1000 genomes]
rs10002888	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10004364	0.87[ASN][1000 genomes]
rs10004598	0.88[ASN][1000 genomes]
rs10009906	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10010367	0.90[ASN][1000 genomes]
rs10011709	0.93[ASN][1000 genomes]
rs10012434	0.93[ASN][1000 genomes]
rs10012713	0.82[CEU][hapmap]
rs10015190	0.93[ASN][1000 genomes]
rs10015279	0.83[ASN][1000 genomes]
rs10015751	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10019249	0.93[ASN][1000 genomes]
rs10026015	0.90[ASN][1000 genomes]
rs10028434	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10029373	0.90[ASN][1000 genomes]
rs10031363	0.88[ASN][1000 genomes]
rs10033104	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10034769	0.88[ASN][1000 genomes]
rs10155434	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1039762	0.90[ASN][1000 genomes]
rs1039763	0.90[ASN][1000 genomes]
rs10434185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10519678	0.89[ASN][1000 genomes]
rs10857405	0.88[ASN][1000 genomes]
rs11100770	0.88[ASN][1000 genomes]
rs11100771	0.88[ASN][1000 genomes]
rs11100772	0.85[ASN][1000 genomes]
rs11100778	0.92[ASN][1000 genomes]
rs11100779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11100780	0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs11100781	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11100782	0.89[ASN][1000 genomes]
rs11100783	0.90[ASN][1000 genomes]
rs11724872	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs11725565	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs11727441	0.90[ASN][1000 genomes]
rs11728962	0.89[ASN][1000 genomes]
rs11732484	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11737209	0.90[ASN][1000 genomes]
rs11933603	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs11940580	0.90[ASN][1000 genomes]
rs11947142	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12499485	0.89[ASN][1000 genomes]
rs12501994	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12505142	0.89[ASN][1000 genomes]
rs12506120	0.84[ASN][1000 genomes]
rs12640698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13102238	0.87[ASN][1000 genomes]
rs13106497	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs13113047	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13114280	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13116414	0.89[ASN][1000 genomes]
rs13116507	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13118943	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13119330	0.89[ASN][1000 genomes]
rs13128884	0.90[ASN][1000 genomes]
rs13137565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138084	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13139457	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs13140643	0.88[ASN][1000 genomes]
rs13151561	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440410	0.89[ASN][1000 genomes]
rs1440411	0.90[ASN][1000 genomes]
rs1440412	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1440414	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440416	0.90[ASN][1000 genomes]
rs1440418	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440419	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1470130	0.90[ASN][1000 genomes]
rs1605581	0.90[ASN][1000 genomes]
rs2010767	0.89[ASN][1000 genomes]
rs2119269	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2165301	0.89[ASN][1000 genomes]
rs2165302	0.90[ASN][1000 genomes]
rs2323076	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2323077	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28470858	0.89[ASN][1000 genomes]
rs28592151	0.93[ASN][1000 genomes]
rs28649839	0.90[ASN][1000 genomes]
rs300894	0.82[CEU][hapmap]
rs300921	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300924	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300925	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300927	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs300929	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs300934	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300938	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300939	0.90[ASN][1000 genomes]
rs300940	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300941	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300943	0.82[CEU][hapmap]
rs300951	0.86[CEU][hapmap];0.88[CHB][hapmap]
rs34168479	0.90[ASN][1000 genomes]
rs34342939	0.89[ASN][1000 genomes]
rs34664017	0.93[ASN][1000 genomes]
rs3910622	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4131029	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs4132266	0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4234886	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4234887	0.89[ASN][1000 genomes]
rs4285045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4290853	0.89[ASN][1000 genomes]
rs4318600	0.88[ASN][1000 genomes]
rs4323054	0.88[ASN][1000 genomes]
rs4323055	0.88[ASN][1000 genomes]
rs4333135	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4336176	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4407450	0.89[ASN][1000 genomes]
rs4413361	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4502634	0.88[ASN][1000 genomes]
rs4511955	0.90[ASN][1000 genomes]
rs4513514	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4561881	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4566607	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4574353	0.89[ASN][1000 genomes]
rs4579067	0.82[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4582112	0.90[ASN][1000 genomes]
rs4626148	0.88[ASN][1000 genomes]
rs4637346	0.90[ASN][1000 genomes]
rs4690715	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4690771	0.88[ASN][1000 genomes]
rs4690775	0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4690777	0.89[ASN][1000 genomes]
rs4690778	0.86[ASN][1000 genomes]
rs4690779	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4690780	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4690781	0.89[ASN][1000 genomes]
rs4690783	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs534750	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57168887	0.89[ASN][1000 genomes]
rs587254	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs632359	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6537150	0.88[ASN][1000 genomes]
rs6537151	0.88[ASN][1000 genomes]
rs6812522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816223	0.84[ASN][1000 genomes]
rs6818149	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs6820340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6820538	0.90[ASN][1000 genomes]
rs6822299	0.89[ASN][1000 genomes]
rs6826771	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6827229	0.90[ASN][1000 genomes]
rs6828369	0.89[ASN][1000 genomes]
rs6829621	0.88[ASN][1000 genomes]
rs6832943	0.89[ASN][1000 genomes]
rs6833582	0.89[ASN][1000 genomes]
rs6837133	0.84[ASN][1000 genomes]
rs6839312	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6845478	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6845907	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6848475	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6854861	0.88[ASN][1000 genomes]
rs6856785	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72719159	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719160	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719163	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719173	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72719179	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719180	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7435424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7436840	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs763918	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7656276	0.93[ASN][1000 genomes]
rs7670439	0.93[ASN][1000 genomes]
rs7673827	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7675127	0.82[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7680365	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685075	0.88[ASN][1000 genomes]
rs7685461	0.88[ASN][1000 genomes]
rs7687417	0.93[ASN][1000 genomes]
rs7693583	0.88[ASN][1000 genomes]
rs7693817	0.88[ASN][1000 genomes]
rs9308169	0.89[ASN][1000 genomes]
rs9631769	0.88[ASN][1000 genomes]
rs9685571	0.88[ASN][1000 genomes]
rs9790396	0.88[ASN][1000 genomes]
rs9790822	0.88[ASN][1000 genomes]
rs985619	0.89[ASN][1000 genomes]
rs9992676	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9996072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9998017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144096600-144104800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:144096800-144104000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:144097600-144099600	ZNF genes & repeats	Fetal Muscle Leg	muscle
4	chr4:144097600-144100400	ZNF genes & repeats	Primary T cells from cord blood	blood
5	chr4:144097600-144100600	ZNF genes & repeats	Fetal Lung	lung
6	chr4:144097600-144102200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr4:144097600-144103200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:144097800-144104000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:144097800-144104800	Weak transcription	Psoas Muscle	Psoas
10	chr4:144098000-144102000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:144098000-144104400	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:144098200-144103800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:144098400-144103600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:144098400-144104800	Weak transcription	HSMMtube	muscle
15	chr4:144098600-144104600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:144098800-144099200	ZNF genes & repeats	Brain Anterior Caudate	brain
17	chr4:144098800-144099200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
18	chr4:144098800-144100400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr4:144098800-144100600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:144099000-144099200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:144099000-144099200	ZNF genes & repeats	Aorta	Aorta
22	chr4:144099000-144099200	ZNF genes & repeats	Left Ventricle	heart
23	chr4:144099000-144099200	ZNF genes & repeats	Small Intestine	intestine
24	chr4:144099000-144100800	ZNF genes & repeats	Primary B cells from cord blood	blood

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