Variant report

Variant	rs76928788
Chromosome Location	chr3:46949112-46949113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46942485..46946438-chr3:46946739..46950463,8	K562	blood:
2	chr3:46745401..46748199-chr3:46947346..46950114,2	K562	blood:
3	chr3:46736421..46738516-chr3:46947579..46949832,2	MCF-7	breast:
4	chr3:46733415..46736742-chr3:46948490..46952108,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160801	Chromatin interaction
ENSG00000178038	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007449	chr3:46652343-46986578	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv536554	chr3:46652343-46986578	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv2757869	chr3:46680452-46972489	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv2759147	chr3:46680452-46972489	Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv536558	chr3:46706571-47024756	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv915922	chr3:46768104-47009805	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv876752	chr3:46879831-46967040	Bivalent/Poised TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv876753	chr3:46884552-46957298	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv876754	chr3:46884552-46967040	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv876755	chr3:46895109-47061183	Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv460526	chr3:46935527-47001350	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv3402690	chr3:46946948-46951346	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	esv3336694	chr3:46947948-46951446	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46934400-46951000	Weak transcription	Psoas Muscle	Psoas
2	chr3:46934600-46949400	Weak transcription	Fetal Kidney	kidney
3	chr3:46940400-46950800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:46940800-46950000	Weak transcription	Gastric	stomach
5	chr3:46941000-46949800	Weak transcription	Ovary	ovary
6	chr3:46941800-46949200	Weak transcription	Adipose Nuclei	Adipose
7	chr3:46941800-46949600	Weak transcription	Fetal Lung	lung
8	chr3:46941800-46949600	Weak transcription	HSMMtube	muscle
9	chr3:46942000-46950600	Weak transcription	Fetal Intestine Small	intestine
10	chr3:46944200-46950800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:46945200-46950000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:46945200-46950600	Weak transcription	Placenta	Placenta
13	chr3:46945400-46949600	Weak transcription	HSMM	muscle
14	chr3:46945600-46949600	Weak transcription	HUVEC	blood vessel
15	chr3:46945600-46950000	Weak transcription	Right Ventricle	heart
16	chr3:46945600-46950800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:46945600-46950800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:46945600-46951000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:46945600-46951000	Weak transcription	A549	lung
20	chr3:46945800-46949600	Weak transcription	NH-A	brain
21	chr3:46945800-46950200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:46945800-46950200	Weak transcription	NHEK	skin
23	chr3:46945800-46950800	Weak transcription	Hela-S3	cervix
24	chr3:46945800-46950800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr3:46945800-46951200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:46946000-46949600	Weak transcription	HMEC	breast
27	chr3:46946200-46950000	Weak transcription	Spleen	Spleen
28	chr3:46947800-46951000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:46948000-46950000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:46948000-46951600	Enhancers	Esophagus	oesophagus
31	chr3:46948200-46949800	Weak transcription	Pancreas	Pancrea
32	chr3:46948400-46951600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr3:46948600-46950000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:46948600-46950600	Weak transcription	Left Ventricle	heart
35	chr3:46949000-46951200	Enhancers	Fetal Brain Male	brain

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