Variant report

Variant	rs7695679
Chromosome Location	chr4:86653436-86653437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86651967..86654284-chr4:86654909..86657180,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10516753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10516754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11931466	1.00[AMR][1000 genomes]
rs1482082	1.00[AMR][1000 genomes]
rs17010594	1.00[AMR][1000 genomes]
rs17010650	1.00[AMR][1000 genomes]
rs17010773	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17010775	1.00[AMR][1000 genomes]
rs17010777	1.00[AMR][1000 genomes]
rs1994082	1.00[AMR][1000 genomes]
rs6823467	1.00[AMR][1000 genomes]
rs6841314	1.00[AMR][1000 genomes]
rs6851145	1.00[AMR][1000 genomes]
rs72972865	1.00[AMR][1000 genomes]
rs72972875	1.00[AMR][1000 genomes]
rs7656548	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684018	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86647000-86655400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:86647200-86658200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:86647800-86654600	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:86647800-86655600	Weak transcription	Small Intestine	intestine
5	chr4:86647800-86656600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:86647800-86656600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:86647800-86662600	Weak transcription	Left Ventricle	heart
8	chr4:86647800-86662600	Weak transcription	Spleen	Spleen
9	chr4:86648000-86654800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:86648000-86655200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:86648200-86654600	Weak transcription	Primary B cells from cord blood	blood
12	chr4:86648400-86662600	Weak transcription	Pancreas	Pancrea
13	chr4:86649000-86654800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:86649000-86655200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:86650200-86655200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr4:86650400-86662400	Weak transcription	Adipose Nuclei	Adipose
17	chr4:86650800-86656000	Weak transcription	HSMMtube	muscle
18	chr4:86651200-86655600	Weak transcription	HSMM	muscle
19	chr4:86651400-86654600	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:86652400-86653800	Enhancers	Stomach Mucosa	stomach
21	chr4:86653000-86653600	Weak transcription	GM12878-XiMat	blood
22	chr4:86653000-86655000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr4:86653000-86655400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:86653000-86658600	Enhancers	Primary B cells from peripheral blood	blood
25	chr4:86653200-86653600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:86653200-86653600	Enhancers	Brain Cingulate Gyrus	brain
27	chr4:86653200-86653600	Enhancers	NHDF-Ad	bronchial
28	chr4:86653200-86653800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:86653200-86653800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:86653200-86653800	Enhancers	Fetal Heart	heart
31	chr4:86653400-86653800	Enhancers	Fetal Lung	lung
32	chr4:86653400-86653800	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links