Variant report

Variant	rs7695727
Chromosome Location	chr4:100570781-100570782
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11097666	0.89[EUR][1000 genomes]
rs13107620	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13121590	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13129571	0.86[EUR][1000 genomes]
rs13135675	0.97[EUR][1000 genomes]
rs13135826	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13142452	0.97[EUR][1000 genomes]
rs13146743	0.96[AFR][1000 genomes]
rs13151234	0.89[EUR][1000 genomes]
rs1491236	0.81[EUR][1000 genomes]
rs17029189	0.97[EUR][1000 genomes]
rs17029211	0.97[EUR][1000 genomes]
rs17029213	0.97[EUR][1000 genomes]
rs17029215	0.97[EUR][1000 genomes]
rs17029260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17029267	0.93[AFR][1000 genomes]
rs34066136	0.85[AMR][1000 genomes]
rs34135026	0.89[EUR][1000 genomes]
rs34246356	0.89[EUR][1000 genomes]
rs34678000	0.97[EUR][1000 genomes]
rs34734558	0.97[EUR][1000 genomes]
rs34756677	0.97[EUR][1000 genomes]
rs34777713	0.87[EUR][1000 genomes]
rs34870956	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34874297	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35074439	0.89[EUR][1000 genomes]
rs35189300	0.93[EUR][1000 genomes]
rs35391161	0.97[EUR][1000 genomes]
rs35402611	0.86[EUR][1000 genomes]
rs35561084	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35595171	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35661838	0.93[EUR][1000 genomes]
rs35824615	0.97[EUR][1000 genomes]
rs35826214	0.93[EUR][1000 genomes]
rs35992230	0.89[EUR][1000 genomes]
rs41275719	0.97[EUR][1000 genomes]
rs6532821	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6821960	1.00[CEU][hapmap]
rs6825904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6830456	0.91[AFR][1000 genomes]
rs6851824	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71612697	0.89[EUR][1000 genomes]
rs71612700	0.89[EUR][1000 genomes]
rs71612702	0.97[EUR][1000 genomes]
rs71614603	0.97[EUR][1000 genomes]
rs71614605	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71614609	0.85[AMR][1000 genomes]
rs71619723	0.97[EUR][1000 genomes]
rs7665414	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7667001	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7667218	0.85[AMR][1000 genomes]
rs7688278	0.89[EUR][1000 genomes]
rs871320	0.82[YRI][hapmap];0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100566600-100575800	Weak transcription	Fetal Heart	heart
2	chr4:100567800-100579200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:100568600-100575000	Active TSS	HSMMtube	muscle
4	chr4:100569400-100571000	Active TSS	Brain Anterior Caudate	brain
5	chr4:100569400-100571200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:100569400-100574800	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
7	chr4:100570000-100571600	Enhancers	Ovary	ovary
8	chr4:100570000-100572000	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
9	chr4:100570000-100572800	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
10	chr4:100570000-100573200	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
11	chr4:100570200-100575600	Weak transcription	Left Ventricle	heart
12	chr4:100570200-100576200	Weak transcription	Fetal Lung	lung
13	chr4:100570400-100570800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:100570400-100570800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr4:100570400-100570800	Flanking Active TSS	Right Ventricle	heart
16	chr4:100570400-100570800	Enhancers	Spleen	Spleen
17	chr4:100570400-100571000	Flanking Active TSS	Psoas Muscle	Psoas

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