Variant report

Variant	rs7698691
Chromosome Location	chr4:143528184-143528185
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143388165..143401257-chr4:143512284..143528837,40	MCF-7	breast:
2	chr4:143521789..143524900-chr4:143525701..143529470,4	MCF-7	breast:
3	chr4:143388945..143399475-chr4:143525396..143540220,51	MCF-7	breast:
4	chr4:143470148..143471805-chr4:143527645..143530325,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1031104	0.90[ASN][1000 genomes]
rs10857397	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1116690	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11723809	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11943397	0.82[ASN][1000 genomes]
rs11944455	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12233703	0.83[ASN][1000 genomes]
rs12500698	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12508480	0.85[ASN][1000 genomes]
rs13102191	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13109603	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13109664	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13114452	0.89[ASN][1000 genomes]
rs13119090	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13125362	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13125853	0.87[ASN][1000 genomes]
rs13133181	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1364921	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1364922	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1364925	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1373041	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1443187	0.85[ASN][1000 genomes]
rs1443188	0.82[ASN][1000 genomes]
rs1443191	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1473222	0.80[AMR][1000 genomes]
rs1899565	0.82[ASN][1000 genomes]
rs1961836	0.83[ASN][1000 genomes]
rs2017146	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2083781	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2120158	0.82[ASN][1000 genomes]
rs2165820	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2197216	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2217017	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2874870	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2874871	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4975311	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6537123	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6830053	0.90[ASN][1000 genomes]
rs6830886	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6831966	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6839894	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7434705	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7437824	0.85[ASN][1000 genomes]
rs7441478	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7680076	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7680631	0.90[ASN][1000 genomes]
rs7685086	0.82[ASN][1000 genomes]
rs7695514	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs978361	0.82[ASN][1000 genomes]
rs979194	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs979195	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs979196	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143517000-143530200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:143517400-143539400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:143520000-143536000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:143524400-143529000	Weak transcription	Aorta	Aorta
5	chr4:143525600-143535200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:143527000-143536200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links