Variant report

Variant	rs7698954
Chromosome Location	chr4:102209999-102210000
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102199385..102202283-chr4:102207975..102210015,2	MCF-7	breast:
2	chr4:102206850..102209343-chr4:102209669..102211406,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11943655	0.86[YRI][hapmap];0.92[AFR][1000 genomes]
rs11946138	1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6532923	1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6836243	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6841711	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7655806	0.92[AFR][1000 genomes]
rs7684556	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102199600-102210400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:102200000-102211800	Weak transcription	HMEC	breast
3	chr4:102200600-102211800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:102201000-102213000	Weak transcription	Fetal Heart	heart
5	chr4:102201200-102218200	Weak transcription	NHEK	skin
6	chr4:102201400-102214200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:102202200-102210600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:102204800-102211200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:102205000-102212600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:102205200-102210600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:102206200-102210200	Enhancers	Ovary	ovary
12	chr4:102206200-102210200	Enhancers	Psoas Muscle	Psoas
13	chr4:102206600-102210600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:102206800-102210400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr4:102207000-102216600	Weak transcription	NH-A	brain
16	chr4:102207200-102210000	Weak transcription	HUVEC	blood vessel
17	chr4:102207200-102212000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr4:102207400-102212000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:102207400-102212000	Weak transcription	Gastric	stomach
20	chr4:102207400-102214200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:102207400-102214200	Weak transcription	Esophagus	oesophagus
22	chr4:102207600-102211400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr4:102207600-102226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:102207800-102210200	Enhancers	Adipose Nuclei	Adipose
25	chr4:102208000-102211200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:102208000-102212400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr4:102208200-102210600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr4:102208200-102210600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr4:102208400-102210200	Enhancers	Colon Smooth Muscle	Colon
30	chr4:102208400-102210800	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr4:102208400-102211200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr4:102208600-102210000	Enhancers	Stomach Mucosa	stomach
33	chr4:102208600-102210200	Enhancers	H1 Cell Line	embryonic stem cell
34	chr4:102208600-102210200	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr4:102208600-102210200	Enhancers	Fetal Kidney	kidney
36	chr4:102208600-102210200	Enhancers	Fetal Lung	lung
37	chr4:102208600-102210200	Enhancers	Small Intestine	intestine
38	chr4:102208600-102211200	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr4:102208600-102212800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr4:102208600-102212800	Enhancers	Brain Anterior Caudate	brain
41	chr4:102208600-102213200	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr4:102208800-102210200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:102208800-102210200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:102208800-102210600	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr4:102208800-102210800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr4:102208800-102211800	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr4:102209000-102210200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr4:102209000-102210200	Enhancers	Primary B cells from peripheral blood	blood
49	chr4:102209000-102210400	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr4:102209000-102210400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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