Variant report

Variant	rs7705672
Chromosome Location	chr5:80693646-80693647
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12188470	0.89[EUR][1000 genomes]
rs12188878	0.87[EUR][1000 genomes]
rs17296479	0.89[EUR][1000 genomes]
rs6872459	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80690600-80694600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:80690600-80702800	Weak transcription	Fetal Brain Female	brain
3	chr5:80691800-80693800	Enhancers	Liver	Liver
4	chr5:80692000-80694000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:80692600-80694200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:80692800-80693800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:80693200-80694600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:80693200-80703400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:80693400-80694800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:80693400-80697000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr5:80693400-80703600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:80693400-80721600	Weak transcription	Fetal Brain Male	brain
13	chr5:80693600-80704000	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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