Variant report

Variant	rs7708187
Chromosome Location	chr5:116679847-116679848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11738865	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11750139	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35032750	0.90[EUR][1000 genomes]
rs73268698	0.84[EUR][1000 genomes]
rs73268700	0.84[EUR][1000 genomes]
rs73270505	0.84[EUR][1000 genomes]
rs73270532	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7442686	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116679400-116680200	Active TSS	HepG2	liver
2	chr5:116679600-116680000	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr5:116679600-116680000	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr5:116679600-116680200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr5:116679600-116680200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr5:116679600-116680200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:116679600-116680200	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr5:116679600-116680200	Active TSS	Rectal Mucosa Donor 31	rectum
9	chr5:116679600-116680400	Active TSS	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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