Variant report

Variant	rs770884
Chromosome Location	chr1:93443997-93443998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93331313..93333076-chr1:93443044..93445998,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10874752	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11164848	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11164849	0.84[EUR][1000 genomes]
rs11164854	0.84[ASN][1000 genomes]
rs12092304	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12747275	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1678784	0.84[ASN][1000 genomes]
rs4847386	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4847389	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs514235	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs521428	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs567613	0.85[ASN][1000 genomes]
rs594527	0.85[ASN][1000 genomes]
rs606344	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs619784	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs641462	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs660870	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs663112	0.81[ASN][1000 genomes]
rs6671078	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6671268	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6681240	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6681345	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7524934	0.81[ASN][1000 genomes]
rs753391	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs770883	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs770884	FAM69A	cis	Artery Tibial	GTEx

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93428400-93445800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:93433200-93445000	Enhancers	Primary B cells from cord blood	blood
3	chr1:93434200-93445600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr1:93438800-93446000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:93439000-93444400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:93439400-93446400	Weak transcription	Thymus	Thymus
7	chr1:93439600-93445600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:93439600-93446000	Weak transcription	Fetal Thymus	thymus
9	chr1:93439600-93446400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:93441000-93447800	Enhancers	Primary B cells from peripheral blood	blood
11	chr1:93441600-93445400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr1:93441600-93445600	Weak transcription	Primary T cells from cord blood	blood
13	chr1:93441600-93445600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:93441600-93446000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr1:93441600-93446200	Weak transcription	Dnd41	blood
16	chr1:93441800-93445800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr1:93442200-93445800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr1:93442800-93448400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr1:93443400-93445600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr1:93443400-93446000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr1:93443600-93444000	Active TSS	Primary T cells fromperipheralblood	blood
22	chr1:93443600-93444000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr1:93443600-93444000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr1:93443600-93444000	Active TSS	GM12878-XiMat	blood
25	chr1:93443600-93444200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr1:93443600-93445400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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