Variant report

Variant	rs7709102
Chromosome Location	chr5:15720451-15720452
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11748700	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs11748790	0.82[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11750054	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12152734	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs12153747	0.82[ASN][1000 genomes]
rs13170407	0.87[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap]
rs13180702	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13358928	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16867538	0.82[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.80[AMR][1000 genomes]
rs16867615	1.00[CEU][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16867617	1.00[CEU][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17602392	0.90[YRI][hapmap]
rs17602470	0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap]
rs2937074	0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs2937075	0.93[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34308971	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35167698	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35719201	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4133004	0.87[CHB][hapmap];0.80[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs4146556	0.93[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4235554	1.00[CEU][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4235555	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4235556	0.81[CHB][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs4273604	0.93[CHB][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4289558	0.81[CHB][hapmap]
rs4312881	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4318779	0.93[CHB][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4320259	0.82[CHB][hapmap]
rs4407633	0.82[JPT][hapmap]
rs4435862	0.90[YRI][hapmap]
rs4484432	0.80[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4505949	0.84[JPT][hapmap]
rs4568364	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4571472	0.85[YRI][hapmap]
rs4574543	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4576146	0.88[ASN][1000 genomes]
rs4582274	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4590179	0.81[AFR][1000 genomes]
rs4701637	0.83[YRI][hapmap]
rs4701639	0.85[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs4702099	0.85[YRI][hapmap]
rs4702102	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs4702103	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4702108	0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs6554897	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs6875955	0.82[YRI][hapmap]
rs6898184	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs7704277	0.81[CHB][hapmap]
rs7707563	0.82[YRI][hapmap]
rs7713555	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs924455	0.81[CHB][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:72 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	nsv597263	chr5:15672137-15720478	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv2757107	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv2759327	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv432718	chr5:15688927-15723346	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv2756126	chr5:15700541-15720478	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv2763894	chr5:15714022-15863332	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	esv2760924	chr5:15716127-15730060	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv597265	chr5:15718791-15720856	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv3468861	chr5:15719031-15721332	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv10671	chr5:15719037-15721344	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	nsv980965	chr5:15719140-15731242	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	esv3584828	chr5:15719218-15720597	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	nsv442939	chr5:15719218-15720597	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	esv2752586	chr5:15719222-15720478	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	esv2752601	chr5:15719222-15720478	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	esv2752924	chr5:15719222-15720478	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	esv2753004	chr5:15719222-15720478	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	esv2753375	chr5:15719222-15720478	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	esv2753728	chr5:15719222-15720478	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	esv2753948	chr5:15719222-15720478	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	esv2754190	chr5:15719222-15720478	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	esv2755539	chr5:15719222-15720478	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
35	esv2755708	chr5:15719222-15720478	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	nsv432719	chr5:15719222-15720478	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
37	esv2421516	chr5:15719222-15720597	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	esv3584829	chr5:15719222-15720597	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
39	esv3468863	chr5:15719318-15721056	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	esv17129	chr5:15719329-15720964	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
41	nsv818319	chr5:15719350-15720478	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
42	nsv597266	chr5:15719350-15720856	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
43	esv3468862	chr5:15719381-15721033	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
44	esv3468860	chr5:15719401-15720986	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
45	nsv597268	chr5:15719402-15720756	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
46	nsv597269	chr5:15719402-15720856	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
47	nsv597270	chr5:15719402-15723633	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
48	nsv471736	chr5:15719456-15720910	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
49	esv3468865	chr5:15719466-15720951	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
50	nsv823014	chr5:15719493-15720796	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15715200-15720600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:15715600-15720600	Enhancers	Fetal Heart	heart
3	chr5:15716600-15721000	Enhancers	HUVEC	blood vessel
4	chr5:15717400-15721400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:15717600-15721400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:15718200-15720800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr5:15718800-15721600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:15719000-15720800	Enhancers	Brain Substantia Nigra	brain
9	chr5:15719200-15720800	Enhancers	NHDF-Ad	bronchial
10	chr5:15719200-15725800	Weak transcription	Fetal Brain Male	brain
11	chr5:15719600-15720800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:15719800-15720600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:15719800-15720800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr5:15719800-15720800	Enhancers	Brain Angular Gyrus	brain
15	chr5:15720000-15721200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:15720000-15721200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr5:15720400-15721400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:15720400-15721400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:15720400-15721400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:15720400-15721400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr5:15720400-15722000	Weak transcription	Left Ventricle	heart

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