Variant report

Variant	rs7710998
Chromosome Location	chr5:116549669-116549670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10040337	0.85[EUR][1000 genomes]
rs10042197	0.83[EUR][1000 genomes]
rs10070521	0.82[EUR][1000 genomes]
rs10073120	0.82[EUR][1000 genomes]
rs10073125	0.84[EUR][1000 genomes]
rs10478336	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13171356	0.83[EUR][1000 genomes]
rs13182834	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34479127	0.82[EUR][1000 genomes]
rs34498712	0.81[EUR][1000 genomes]
rs6595019	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66726800	0.82[EUR][1000 genomes]
rs6874362	0.83[EUR][1000 genomes]
rs6875387	0.86[EUR][1000 genomes]
rs7447805	0.82[EUR][1000 genomes]
rs7703141	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7714567	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7716765	0.81[EUR][1000 genomes]
rs7732638	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7735582	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
2	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116541800-116550600	Weak transcription	Stomach Mucosa	stomach
2	chr5:116543000-116559000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:116548400-116549800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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