Variant report

Variant	rs7711108
Chromosome Location	chr5:59576907-59576908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10939844	1.00[CHB][hapmap]
rs13178509	1.00[YRI][hapmap]
rs60612289	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6893928	1.00[CHB][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7711093	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59559600-59584800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59567400-59581600	Weak transcription	Fetal Brain Male	brain
3	chr5:59574000-59577000	Weak transcription	A549	lung
4	chr5:59574400-59579400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:59575400-59580800	Weak transcription	Aorta	Aorta
6	chr5:59576000-59577600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:59576800-59577400	Enhancers	Fetal Kidney	kidney
8	chr5:59576800-59577800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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