Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:54966032..54966839-chr5:116662215..116662871,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10040337	0.81[EUR][1000 genomes]
rs10042197	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10070521	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10073125	0.80[EUR][1000 genomes]
rs10074665	0.86[EUR][1000 genomes]
rs10477560	0.86[EUR][1000 genomes]
rs10478340	0.86[EUR][1000 genomes]
rs10478341	0.85[EUR][1000 genomes]
rs10478342	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171356	0.81[EUR][1000 genomes]
rs13182834	1.00[ASN][1000 genomes]
rs1494827	0.86[EUR][1000 genomes]
rs1494828	0.86[EUR][1000 genomes]
rs1845562	0.86[EUR][1000 genomes]
rs1845563	0.94[EUR][1000 genomes]
rs1908407	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1979732	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220859	0.86[EUR][1000 genomes]
rs2416466	0.86[EUR][1000 genomes]
rs34479127	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4580811	0.86[EUR][1000 genomes]
rs66726800	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6874362	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7447805	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7703141	1.00[ASN][1000 genomes]
rs7708893	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714567	1.00[ASN][1000 genomes]
rs7716765	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735582	0.81[EUR][1000 genomes]
rs7737236	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv599486	chr5:116607979-116669707	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116662600-116663000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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