Variant report

Variant	rs7713254
Chromosome Location	chr5:117345905-117345906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:116822579..116823522-chr5:117345341..117346279,5	MCF-7	breast:
2	chr5:116790507..116792184-chr5:117345350..117346963,2	MCF-7	breast:
3	chr5:117345316..117346227-chr5:118111319..118112071,2	MCF-7	breast:
4	chr5:117345254..117346267-chr5:117474942..117475858,13	MCF-7	breast:
5	chr5:117345372..117346225-chr5:117357513..117358341,4	MCF-7	breast:
6	chr5:116822796..116823373-chr5:117345646..117346259,4	MCF-7	breast:
7	chr5:117281554..117282055-chr5:117345500..117346273,2	MCF-7	breast:
8	chr5:117345575..117346316-chr5:118111227..118112029,2	MCF-7	breast:
9	chr5:116822477..116823522-chr5:117345341..117346321,14	MCF-7	breast:
10	chr5:117345300..117346190-chr5:117357499..117358381,2	MCF-7	breast:
11	chr5:117326789..117327367-chr5:117345464..117346258,2	MCF-7	breast:
12	chr5:116752873..116753980-chr5:117345444..117346250,3	MCF-7	breast:
13	chr5:117345305..117346227-chr5:117474940..117475818,10	MCF-7	breast:
14	chr5:117345305..117346362-chr5:117474865..117475949,14	MCF-7	breast:
15	chr5:117345316..117346232-chr5:118111290..118112171,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17143448	1.00[ASN][1000 genomes]
rs4546419	1.00[ASN][1000 genomes]
rs57763634	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs66893473	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6867311	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6867333	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6877117	1.00[ASN][1000 genomes]
rs72786745	1.00[ASN][1000 genomes]
rs72786747	1.00[ASN][1000 genomes]
rs72786749	1.00[ASN][1000 genomes]
rs72786754	1.00[ASN][1000 genomes]
rs72786755	1.00[ASN][1000 genomes]
rs72786779	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786780	1.00[ASN][1000 genomes]
rs72786782	1.00[ASN][1000 genomes]
rs72786783	1.00[ASN][1000 genomes]
rs72786785	1.00[ASN][1000 genomes]
rs72786789	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027428	chr5:117072745-118036353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv537877	chr5:117072745-118036353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1067621	chr5:117102544-118036352	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv531292	chr5:117102544-118036352	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv1027231	chr5:117144919-117375680	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537878	chr5:117144919-117375680	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1021370	chr5:117217907-117479218	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv830460	chr5:117282763-117448057	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv599491	chr5:117286831-117376303	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016903	chr5:117301623-117483934	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117345400-117346000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr5:117345800-117346800	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links