Variant report

Variant	rs77133568
Chromosome Location	chr10:51051964-51051965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:51045976..51047972-chr10:51051417..51053268,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758219	chr10:50971974-51925166	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	esv2759749	chr10:50971974-51925166	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv428232	chr10:50971974-51925166	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv895379	chr10:51022933-51187793	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv32940	chr10:51051718-51488059	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:51019800-51053400	Weak transcription	Small Intestine	intestine
2	chr10:51024000-51052800	Weak transcription	NHLF	lung
3	chr10:51024200-51053200	Weak transcription	Fetal Brain Male	brain
4	chr10:51024600-51054800	Weak transcription	Fetal Heart	heart
5	chr10:51028200-51053000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:51028200-51054600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:51028400-51053000	Weak transcription	Colonic Mucosa	Colon
8	chr10:51028400-51055000	Weak transcription	Spleen	Spleen
9	chr10:51028400-51056200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:51031000-51053200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:51033200-51052000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:51038200-51052000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:51038800-51052000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr10:51039800-51052800	Weak transcription	NHDF-Ad	bronchial
15	chr10:51040000-51053400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:51040400-51053200	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:51040400-51053200	Weak transcription	Esophagus	oesophagus
18	chr10:51040600-51052000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:51040600-51053000	Weak transcription	Brain Substantia Nigra	brain
20	chr10:51040600-51053000	Weak transcription	Gastric	stomach
21	chr10:51040600-51053200	Weak transcription	Brain Angular Gyrus	brain
22	chr10:51040600-51053200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:51040600-51053400	Weak transcription	Brain Anterior Caudate	brain
24	chr10:51040600-51053400	Weak transcription	Pancreas	Pancrea
25	chr10:51040800-51053200	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:51041000-51053200	Weak transcription	Aorta	Aorta
27	chr10:51041000-51054000	Weak transcription	Thymus	Thymus
28	chr10:51041000-51055000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:51043200-51052000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:51043400-51052000	Strong transcription	Primary B cells from peripheral blood	blood
31	chr10:51043600-51052000	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr10:51043600-51052200	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr10:51043600-51053200	Weak transcription	Stomach Mucosa	stomach
34	chr10:51043800-51052200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:51043800-51052200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:51044200-51052800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr10:51044400-51053600	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr10:51044800-51052200	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:51045000-51052000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:51045000-51053600	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:51045200-51052000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:51045600-51052000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:51045600-51052200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:51045800-51052000	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:51045800-51052000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:51046400-51052000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:51046600-51053600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:51046800-51052000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:51046800-51052000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:51046800-51052000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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