Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10461451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1115372	0.87[CEU][hapmap]
rs12054887	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12653863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13166747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13168480	0.94[ASN][1000 genomes]
rs13171028	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1363862	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs1423246	0.96[CEU][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34353877	0.94[ASN][1000 genomes]
rs34762247	0.94[ASN][1000 genomes]
rs35811820	0.94[ASN][1000 genomes]
rs36050835	0.94[ASN][1000 genomes]
rs4349679	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4394088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4409049	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs4580739	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57237852	0.94[ASN][1000 genomes]
rs6449466	0.94[ASN][1000 genomes]
rs6449467	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6449468	0.94[ASN][1000 genomes]
rs6860887	0.87[CEU][hapmap]
rs6878055	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6897671	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7735149	0.93[ASN][1000 genomes]
rs7737905	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3421025	chr5:59598195-59602393	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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