Variant report

Variant	rs7721907
Chromosome Location	chr5:118369899-118369900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:118369704..118371525-chr5:118389803..118392362,2	MCF-7	breast:
2	chr5:118368716..118371473-chr5:118745001..118746920,2	K562	blood:
3	chr5:118348689..118350989-chr5:118368039..118370331,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTWD2-1	chr5:118368885-118370224	ucscGeneNc_uc003ksb_2

Extended variants
information (count: 39 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10519564	1.00[JPT][hapmap]
rs11959589	0.84[CEU][hapmap]
rs12109156	1.00[JPT][hapmap]
rs12187606	1.00[JPT][hapmap]
rs17132677	1.00[JPT][hapmap]
rs17144715	1.00[JPT][hapmap]
rs17144716	1.00[JPT][hapmap]
rs17144806	1.00[JPT][hapmap]
rs17144824	1.00[JPT][hapmap]
rs17144836	1.00[JPT][hapmap]
rs17144893	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17309689	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2084460	0.84[CEU][hapmap]
rs2217310	1.00[JPT][hapmap]
rs2377127	1.00[JPT][hapmap]
rs2442122	0.80[ASN][1000 genomes]
rs4634381	1.00[JPT][hapmap]
rs4895183	1.00[JPT][hapmap]
rs55811049	0.89[ASN][1000 genomes]
rs55968902	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56165240	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595170	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6860946	1.00[JPT][hapmap]
rs6871241	1.00[JPT][hapmap]
rs6874109	1.00[JPT][hapmap]
rs6874399	1.00[JPT][hapmap]
rs6880144	1.00[JPT][hapmap]
rs6892437	1.00[JPT][hapmap]
rs6893733	0.80[ASN][1000 genomes]
rs6894429	0.80[ASN][1000 genomes]
rs73240722	0.85[ASN][1000 genomes]
rs7706037	1.00[CEU][hapmap];0.94[GIH][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs7719250	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7734815	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1015878	chr5:118288904-118414706	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv537881	chr5:118288904-118414706	Active TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv882774	chr5:118325429-118553470	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1018539	chr5:118355284-118445244	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7721907	DTWD2	cis	cerebellum	SCAN
rs7721907	TICAM2	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118368000-118371600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr5:118368000-118371800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:118368000-118371800	Weak transcription	NHDF-Ad	bronchial
4	chr5:118368000-118373600	Weak transcription	Pancreas	Pancrea
5	chr5:118368600-118371600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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