Variant report

Variant	rs7722027
Chromosome Location	chr5:118181079-118181080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10447237	0.83[AMR][1000 genomes]
rs11949851	0.86[ASN][1000 genomes]
rs12187606	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12659444	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1473231	1.00[JPT][hapmap]
rs1473337	1.00[JPT][hapmap]
rs1510969	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1567521	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17132673	0.83[AMR][1000 genomes]
rs17144708	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17144714	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17144715	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17144716	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17144738	1.00[JPT][hapmap]
rs17144795	1.00[JPT][hapmap]
rs17144806	0.88[ASN][1000 genomes]
rs17144818	1.00[JPT][hapmap]
rs17144840	1.00[CEU][hapmap]
rs17144857	1.00[JPT][hapmap]
rs17144871	1.00[JPT][hapmap]
rs1864109	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2099092	0.81[AMR][1000 genomes]
rs2115301	0.81[AMR][1000 genomes]
rs2115302	0.81[AMR][1000 genomes]
rs2161348	1.00[CEU][hapmap]
rs2161349	1.00[JPT][hapmap]
rs2162888	0.81[AMR][1000 genomes]
rs370827	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3813297	0.83[AMR][1000 genomes]
rs3813298	0.83[AMR][1000 genomes]
rs383585	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs386288	0.94[EUR][1000 genomes]
rs400967	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs447317	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4895183	0.91[ASN][1000 genomes]
rs4895347	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4895353	0.81[AMR][1000 genomes]
rs4895354	0.81[AMR][1000 genomes]
rs55821851	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs581887	0.92[EUR][1000 genomes]
rs635083	0.92[EUR][1000 genomes]
rs6861907	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6871241	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6874109	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6881583	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6881776	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6886240	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73234489	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73234502	0.83[AMR][1000 genomes]
rs73236920	0.81[AMR][1000 genomes]
rs7701819	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7709381	0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7726905	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs849728	0.92[EUR][1000 genomes]
rs976586	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv882771	chr5:118170135-118230640	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882772	chr5:118173127-118230640	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882773	chr5:118175640-118241854	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118167800-118186400	Weak transcription	Liver	Liver
2	chr5:118169600-118208600	Weak transcription	Aorta	Aorta
3	chr5:118172200-118188600	Weak transcription	Primary T cells from cord blood	blood
4	chr5:118175400-118186200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:118179400-118182000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr5:118180800-118181800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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