Variant report

Variant	rs7722850
Chromosome Location	chr5:118269554-118269555
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12109252	0.94[ASN][1000 genomes]
rs17381247	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17440213	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2029036	0.97[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28640997	0.86[AFR][1000 genomes]
rs55874944	0.94[ASN][1000 genomes]
rs56078901	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs57503789	1.00[AFR][1000 genomes]
rs73239065	0.94[ASN][1000 genomes]
rs73790355	0.81[ASN][1000 genomes]
rs73792413	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:118227400-118270600	Weak transcription	Ovary	ovary
3	chr5:118233800-118289200	Weak transcription	Psoas Muscle	Psoas
4	chr5:118244000-118279600	Weak transcription	Liver	Liver
5	chr5:118244000-118287400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:118245000-118272200	Weak transcription	Aorta	Aorta
7	chr5:118250400-118289400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:118252000-118279000	Weak transcription	Left Ventricle	heart
9	chr5:118253200-118280200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr5:118253400-118279200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:118254000-118279800	Weak transcription	Pancreas	Pancrea
12	chr5:118256000-118277800	Weak transcription	Fetal Intestine Small	intestine
13	chr5:118257400-118285600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:118257600-118279800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:118258000-118280400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr5:118259200-118270800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:118259600-118286800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:118259600-118305000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:118260600-118289400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr5:118262600-118282800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:118262800-118271000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:118263000-118306000	Weak transcription	Primary T cells from cord blood	blood
23	chr5:118263400-118304000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr5:118267000-118270800	Weak transcription	Lung	lung
25	chr5:118267200-118274000	Weak transcription	Fetal Stomach	stomach
26	chr5:118268000-118269600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr5:118268000-118270600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr5:118268400-118286800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:118268600-118277400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr5:118268800-118270600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr5:118269400-118276800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:118269400-118277800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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