Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10036678	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10054494	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10065640	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1031744	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1031745	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1379112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes]
rs1444238	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16878373	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16878376	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16878412	1.00[JPT][hapmap]
rs2169256	1.00[JPT][hapmap]
rs2219333	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4081739	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4133470	1.00[JPT][hapmap]
rs4541610	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6449481	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723306	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7729652	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7729781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9291696	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9654364	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv881711	chr5:59724947-59890278	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59873000-59908600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:59873000-59908800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:59873200-59881200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr5:59873200-59911000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:59874600-59889600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:59874600-59890400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:59875400-59895800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:59875400-59895800	Weak transcription	Fetal Thymus	thymus
9	chr5:59875400-59899400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:59875400-59911000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:59875600-59878800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:59876400-59890600	Weak transcription	Dnd41	blood

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