Variant report

Variant	rs7723215
Chromosome Location	chr5:97845259-97845260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10515278	1.00[AMR][1000 genomes]
rs11953696	1.00[AMR][1000 genomes]
rs11956809	0.80[AFR][1000 genomes]
rs11957136	0.89[AFR][1000 genomes]
rs17166107	1.00[AMR][1000 genomes]
rs17166117	1.00[AMR][1000 genomes]
rs7727986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97839200-97845400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:97839800-97845800	Weak transcription	Pancreas	Pancrea
3	chr5:97844200-97845400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:97844200-97845600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:97844200-97847200	Enhancers	Fetal Intestine Large	intestine
6	chr5:97844400-97847200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:97844400-97850400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:97844600-97845600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:97844600-97846800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:97844800-97846400	Enhancers	Fetal Muscle Leg	muscle
11	chr5:97845000-97845800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:97845000-97845800	Enhancers	Brain Germinal Matrix	brain
13	chr5:97845000-97845800	Enhancers	Brain Substantia Nigra	brain
14	chr5:97845000-97846000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:97845000-97846000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:97845000-97846000	Enhancers	Small Intestine	intestine
17	chr5:97845000-97846200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr5:97845000-97846200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:97845000-97846200	Enhancers	HSMMtube	muscle
20	chr5:97845000-97846400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:97845000-97846600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:97845000-97846800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr5:97845000-97846800	Enhancers	Fetal Intestine Small	intestine
24	chr5:97845000-97846800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr5:97845000-97847600	Enhancers	Stomach Mucosa	stomach
26	chr5:97845200-97845800	Weak transcription	Gastric	stomach
27	chr5:97845200-97846200	Enhancers	Brain Cingulate Gyrus	brain
28	chr5:97845200-97846400	Enhancers	H9 Cell Line	embryonic stem cell
29	chr5:97845200-97846600	Enhancers	Duodenum Mucosa	Duodenum
30	chr5:97845200-97846800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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