Variant report

Variant	rs7724753
Chromosome Location	chr5:118227240-118227241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10519564	1.00[CHB][hapmap]
rs11959589	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12109156	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs12109252	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1448479	1.00[JPT][hapmap]
rs1510971	1.00[CHB][hapmap]
rs1567520	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17132677	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17144552	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17144714	1.00[JPT][hapmap]
rs17144824	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs17144836	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs17144872	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17144877	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17144883	1.00[JPT][hapmap]
rs17144885	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17144893	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17381247	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs17440213	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2029036	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs2084460	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2115301	1.00[JPT][hapmap]
rs2217310	1.00[CHB][hapmap]
rs2376854	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2377127	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs28640997	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3813297	1.00[JPT][hapmap]
rs3813298	1.00[JPT][hapmap]
rs4392657	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4634381	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs4895184	1.00[JPT][hapmap]
rs4895353	1.00[JPT][hapmap]
rs4895354	1.00[JPT][hapmap]
rs56034428	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57186800	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57503789	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58737380	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60688439	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6860946	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs6862297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6863802	1.00[CHB][hapmap]
rs6870923	1.00[CHB][hapmap]
rs6874399	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6880144	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs6892437	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs6896086	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73789435	0.85[EUR][1000 genomes]
rs73790355	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73792413	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73792414	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7706037	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7710339	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7724403	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734815	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7737716	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv882771	chr5:118170135-118230640	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882772	chr5:118173127-118230640	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882773	chr5:118175640-118241854	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv599563	chr5:118191798-118241854	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118216600-118244800	Weak transcription	Primary T cells from cord blood	blood
2	chr5:118218800-118240600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:118225000-118247000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
5	chr5:118226800-118227400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr5:118226800-118227600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:118227000-118227400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr5:118227000-118227400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:118227000-118227400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:118227000-118227400	Enhancers	Brain Hippocampus Middle	brain
11	chr5:118227000-118227400	Enhancers	Fetal Brain Female	brain
12	chr5:118227000-118227400	Enhancers	Fetal Heart	heart
13	chr5:118227000-118227400	Enhancers	Ovary	ovary
14	chr5:118227000-118227400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr5:118227000-118227600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:118227000-118227600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:118227200-118227400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:118227200-118227400	Enhancers	Brain Anterior Caudate	brain
19	chr5:118227200-118229600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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