Variant report

Variant	rs7725028
Chromosome Location	chr5:59871838-59871839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10043291	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs10058456	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs10939860	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10939862	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs11740327	0.87[CHB][hapmap]
rs11741754	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs11948543	0.86[CHB][hapmap]
rs11955398	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs11959922	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs12514253	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12515025	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12517174	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12517207	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12522801	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs1379114	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs1379115	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs1379116	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1444237	0.82[JPT][hapmap]
rs1456742	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1456743	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1460958	0.81[JPT][hapmap]
rs17387940	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs1870014	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs187481	0.85[AMR][1000 genomes]
rs1992612	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2061250	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs206789	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes]
rs2409791	0.87[AMR][1000 genomes]
rs2409792	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs286153	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs286154	0.87[CHB][hapmap]
rs286156	0.89[AMR][1000 genomes]
rs286158	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs3857236	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs4277863	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4307050	0.90[CEU][hapmap]
rs4326096	0.87[AMR][1000 genomes]
rs4515250	1.00[CEU][hapmap]
rs4524466	0.91[CHB][hapmap]
rs4699959	0.92[AMR][1000 genomes]
rs5012862	0.92[AMR][1000 genomes]
rs6449478	0.87[AMR][1000 genomes]
rs6449480	0.92[AMR][1000 genomes]
rs6449484	1.00[CEU][hapmap]
rs6449493	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs6877561	0.87[AMR][1000 genomes]
rs6896680	1.00[CEU][hapmap]
rs6896942	0.89[AMR][1000 genomes]
rs755077	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs7720233	0.86[CHB][hapmap]
rs7730342	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs9942410	0.91[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv881711	chr5:59724947-59890278	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7725028	DEPDC1B	Cis_1M	lymphoblastoid	RTeQTL
rs7725028	ELOVL7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59864800-59872000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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