Variant report

Variant	rs7725330
Chromosome Location	chr5:97673357-97673358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11953430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956963	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17165859	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17165863	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4018612	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57319934	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60839554	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60902343	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61474805	0.81[AFR][1000 genomes]
rs73157383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73159234	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73159246	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73159269	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv1831511	chr5:97666860-97678414	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	esv1803610	chr5:97670855-97678414	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97671400-97673600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97672400-97674400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:97672800-97676400	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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