Variant report

Variant	rs7726760
Chromosome Location	chr5:146890073-146890074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NRF1	chr5:146889324-146890228	SK-N-SH	brain:	n/a	chr5:146889608-146889617 chr5:146889757-146889771
2	RAD21	chr5:146889343-146890128	IMR90	lung:	n/a	n/a
3	POLR2A	chr5:146888177-146890137	IMR90	lung:	n/a	n/a
4	ZNF143	chr5:146889151-146890080	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr5:146889190-146890256	A549	lung:	n/a	chr5:146889513-146889526
6	POLR2A	chr5:146889157-146890133	SK-N-MC	brain:	n/a	n/a
7	STAT3	chr5:146889924-146890214	MCF10A-Er-Src	breast:	n/a	n/a
8	MAX	chr5:146888533-146890094	HCT-116	colon:	n/a	chr5:146888775-146888785
9	STAT3	chr5:146889878-146890186	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr5:146889945-146890153	MCF10A-Er-Src	breast:	n/a	n/a
11	MAX	chr5:146888642-146890173	A549	lung:	n/a	chr5:146888775-146888785
12	POLR2A	chr5:146889162-146890094	HUVEC	blood vessel:	n/a	n/a
13	SIN3A	chr5:146888497-146890088	H1-hESC	embryonic stem cell:	n/a	n/a
14	ZNF263	chr5:146888343-146890962	HEK293-T-REx	kidney:	n/a	chr5:146889514-146889523 chr5:146888920-146888929
15	STAT3	chr5:146889880-146890214	MCF10A-Er-Src	breast:	n/a	n/a
16	CEBPB	chr5:146889532-146890212	IMR90	lung:	n/a	n/a
17	MAX	chr5:146888963-146890101	HCT-116	colon:	n/a	n/a
18	MXI1	chr5:146886933-146890307	SK-N-SH	brain:	n/a	n/a
19	TBP	chr5:146889360-146890077	H1-hESC	embryonic stem cell:	n/a	n/a
20	MXI1	chr5:146887960-146890311	IMR90	lung:	n/a	n/a
21	KAP1	chr5:146888463-146890800	HEK293	kidney:	n/a	chr5:146890177-146890185

Variant related genes	Relation type
DPYSL3	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11167991	0.97[EUR][1000 genomes]
rs11959608	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12186397	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12653303	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1432845	0.99[EUR][1000 genomes]
rs4705040	0.94[CEU][hapmap];0.98[EUR][1000 genomes]
rs56348704	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57813393	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59183728	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67890710	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6860091	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs726054	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs72833356	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72833358	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72833362	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72833367	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72833377	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73264243	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73794776	0.98[EUR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146887200-146890200	Active TSS	Ovary	ovary
2	chr5:146887200-146890200	Active TSS	Right Atrium	heart
3	chr5:146888000-146890200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:146888000-146890200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
5	chr5:146888200-146890200	Bivalent/Poised TSS	A549	lung
6	chr5:146888400-146890200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
7	chr5:146888600-146890200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr5:146888600-146890200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:146888800-146890200	Active TSS	Fetal Brain Female	brain
10	chr5:146889200-146890200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
11	chr5:146889600-146890200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:146889600-146890200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
13	chr5:146889600-146890200	Flanking Active TSS	Fetal Brain Male	brain
14	chr5:146889800-146890200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr5:146889800-146890200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
16	chr5:146889800-146890200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:146889800-146890200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
18	chr5:146889800-146890200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr5:146889800-146890200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:146889800-146890200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
21	chr5:146889800-146890200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
22	chr5:146889800-146890200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
23	chr5:146889800-146890200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:146889800-146890200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr5:146889800-146890200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:146889800-146890200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:146889800-146890200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr5:146889800-146890200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:146889800-146890200	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr5:146889800-146890200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
31	chr5:146889800-146890200	Flanking Bivalent TSS/Enh	Fetal Lung	lung
32	chr5:146889800-146890200	Enhancers	Placenta Amnion	Placenta Amnion
33	chr5:146889800-146890200	Flanking Active TSS	Rectal Smooth Muscle	rectum
34	chr5:146889800-146890200	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
35	chr5:146889800-146890200	Flanking Active TSS	HUVEC	blood vessel
36	chr5:146889800-146890200	Flanking Active TSS	NH-A	brain
37	chr5:146889800-146890200	Flanking Bivalent TSS/Enh	NHEK	skin
38	chr5:146889800-146890200	Flanking Active TSS	Osteobl	bone
39	chr5:146889800-146890600	Flanking Active TSS	Brain Germinal Matrix	brain
40	chr5:146890000-146890200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:146890000-146890200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
42	chr5:146890000-146890200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr5:146890000-146890200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr5:146890000-146890200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr5:146890000-146890200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:146890000-146890200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr5:146890000-146890200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
48	chr5:146890000-146890200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
49	chr5:146890000-146890200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
50	chr5:146890000-146890200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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