Variant report

Variant	rs7727923
Chromosome Location	chr5:93321900-93321901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10061069	0.82[ASN][1000 genomes]
rs1031423	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10866760	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11135401	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11948511	0.86[ASN][1000 genomes]
rs13167027	0.82[ASN][1000 genomes]
rs13186432	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35672980	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60375544	0.85[EUR][1000 genomes]
rs6869110	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7708175	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7721668	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7728825	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7732578	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7733142	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7735009	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs890738	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93263200-93326400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:93297400-93349600	Weak transcription	Aorta	Aorta
3	chr5:93311800-93326400	Weak transcription	Ovary	ovary
4	chr5:93312600-93330400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:93313600-93326400	Weak transcription	Right Ventricle	heart
6	chr5:93314200-93327400	Weak transcription	Fetal Lung	lung
7	chr5:93314400-93336800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:93314600-93337200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:93315000-93330200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:93316000-93330800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr5:93316600-93326400	Weak transcription	Gastric	stomach
12	chr5:93317400-93330800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr5:93318600-93322000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:93318600-93331400	Weak transcription	Primary T cells from cord blood	blood
15	chr5:93319000-93322000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:93319000-93330800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:93319200-93325000	Weak transcription	Primary B cells from cord blood	blood
18	chr5:93320400-93323000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:93321000-93326400	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
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