Variant report

Variant	rs7731495
Chromosome Location	chr5:36505549-36505550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1001571	1.00[EUR][1000 genomes]
rs3753180	1.00[EUR][1000 genomes]
rs59385748	1.00[EUR][1000 genomes]
rs6873878	0.81[AMR][1000 genomes]
rs6892871	1.00[EUR][1000 genomes]
rs73089416	1.00[EUR][1000 genomes]
rs9283743	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36501800-36506000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:36503200-36505600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:36503200-36507600	Weak transcription	NHEK	skin
4	chr5:36504000-36505600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:36504000-36507600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:36504200-36505600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:36504400-36508400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:36504800-36506400	Enhancers	Colon Smooth Muscle	Colon
9	chr5:36505000-36505800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:36505200-36505600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:36505200-36505600	Enhancers	HMEC	breast
12	chr5:36505200-36505800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:36505400-36505600	Enhancers	NH-A	brain
14	chr5:36505400-36507200	Weak transcription	Hela-S3	cervix
15	chr5:36505400-36507600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:36505400-36507800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:36505400-36508400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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