Variant report

Variant	rs7732073
Chromosome Location	chr5:15955395-15955396
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11133825	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6859383	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs982484	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv4735	chr5:15916346-15961432	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15938400-15958000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:15939600-15956400	Weak transcription	HSMM	muscle
3	chr5:15940000-15959000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:15942200-15955600	Weak transcription	HSMMtube	muscle
5	chr5:15942200-15957800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:15942800-15955400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:15945000-15955400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:15951400-15957000	Weak transcription	Fetal Stomach	stomach
9	chr5:15951400-15959800	Weak transcription	Fetal Muscle Leg	muscle
10	chr5:15952200-15957200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr5:15954400-15956200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:15954400-15957000	Weak transcription	Fetal Lung	lung
13	chr5:15954800-15957400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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