Variant report

Variant	rs7732454
Chromosome Location	chr5:75728752-75728753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10035823	0.91[ASN][1000 genomes]
rs10037366	0.84[ASN][1000 genomes]
rs10063932	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10068404	0.81[ASN][1000 genomes]
rs10213849	0.82[JPT][hapmap]
rs10474472	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11741153	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11743541	0.80[JPT][hapmap]
rs11748078	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11749318	0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs13165962	0.91[ASN][1000 genomes]
rs4130148	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4585420	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56189196	0.96[ASN][1000 genomes]
rs62363252	0.84[ASN][1000 genomes]
rs6887687	0.93[ASN][1000 genomes]
rs7715388	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7717110	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7718320	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75703000-75731800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:75703600-75747000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr5:75711000-75733600	Weak transcription	Thymus	Thymus
4	chr5:75721000-75730200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:75722000-75729200	Weak transcription	Fetal Kidney	kidney
6	chr5:75722200-75735200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:75722400-75737000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:75722600-75737800	Weak transcription	Stomach Mucosa	stomach
9	chr5:75722800-75767800	Weak transcription	Ovary	ovary
10	chr5:75723000-75729400	Weak transcription	Fetal Stomach	stomach
11	chr5:75724000-75732600	Weak transcription	Fetal Intestine Small	intestine
12	chr5:75724000-75735000	Weak transcription	Primary T cells from cord blood	blood
13	chr5:75724200-75729000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:75724200-75738200	Weak transcription	Pancreas	Pancrea
15	chr5:75724200-75748400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:75726200-75744600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr5:75726400-75729200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:75726600-75729600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:75726600-75730200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:75727200-75728800	Enhancers	Primary hematopoietic stem cells	blood
21	chr5:75728000-75728800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr5:75728200-75728800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr5:75728200-75729200	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr5:75728200-75729400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr5:75728200-75729600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr5:75728400-75729400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr5:75728400-75729400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:75728400-75729800	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr5:75728600-75728800	Enhancers	Primary T cells fromperipheralblood	blood
30	chr5:75728600-75728800	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr5:75728600-75729000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr5:75728600-75729000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr5:75728600-75729400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr5:75728600-75729400	Enhancers	H9 Cell Line	embryonic stem cell
35	chr5:75728600-75729400	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr5:75728600-75729400	Enhancers	HepG2	liver
37	chr5:75728600-75729600	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr5:75728600-75729600	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr5:75728600-75729600	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr5:75728600-75729800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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