Variant report

Variant	rs7732611
Chromosome Location	chr5:98306003-98306004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1007453	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10515285	0.86[YRI][hapmap];0.91[AFR][1000 genomes]
rs17166461	0.86[YRI][hapmap];0.89[AFR][1000 genomes]
rs17166471	0.86[YRI][hapmap];0.98[AFR][1000 genomes]
rs17166564	0.87[AFR][1000 genomes]
rs3860806	0.90[AFR][1000 genomes]
rs55654090	0.96[AFR][1000 genomes]
rs57249217	0.98[AFR][1000 genomes]
rs57253975	0.96[AFR][1000 genomes]
rs58477983	0.96[AFR][1000 genomes]
rs60298381	0.91[AFR][1000 genomes]
rs61515191	0.96[AFR][1000 genomes]
rs6864720	0.87[AFR][1000 genomes]
rs731496	0.94[AFR][1000 genomes]
rs73153600	0.87[AFR][1000 genomes]
rs73155434	0.85[AFR][1000 genomes]
rs73155446	0.94[AFR][1000 genomes]
rs73155478	0.96[AFR][1000 genomes]
rs73155484	0.86[AFR][1000 genomes]
rs73155486	0.85[AFR][1000 genomes]
rs73157407	0.96[AFR][1000 genomes]
rs73157426	0.96[AFR][1000 genomes]
rs73776061	0.90[AFR][1000 genomes]
rs7707061	0.83[AFR][1000 genomes]
rs963689	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv882416	chr5:98146106-98312447	Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98305400-98307600	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links