Variant report
| Variant | rs7732638 |
|---|---|
| Chromosome Location | chr5:116553845-116553846 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10040337 | 0.93[EUR][1000 genomes] |
| rs10042197 | 0.91[EUR][1000 genomes] |
| rs10070521 | 0.90[EUR][1000 genomes] |
| rs10073120 | 0.90[EUR][1000 genomes] |
| rs10073125 | 0.92[EUR][1000 genomes] |
| rs10477560 | 0.82[EUR][1000 genomes] |
| rs10478336 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10478340 | 0.82[EUR][1000 genomes] |
| rs10478341 | 0.82[EUR][1000 genomes] |
| rs10478342 | 0.84[EUR][1000 genomes] |
| rs13170929 | 0.83[EUR][1000 genomes] |
| rs13171356 | 0.91[EUR][1000 genomes] |
| rs13182834 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1494827 | 0.82[EUR][1000 genomes] |
| rs1494828 | 0.82[EUR][1000 genomes] |
| rs1845562 | 0.82[EUR][1000 genomes] |
| rs1908407 | 0.87[EUR][1000 genomes] |
| rs2132050 | 0.85[AMR][1000 genomes] |
| rs2220859 | 0.82[EUR][1000 genomes] |
| rs2416466 | 0.82[EUR][1000 genomes] |
| rs34199913 | 0.83[ASN][1000 genomes] |
| rs34421802 | 0.91[ASN][1000 genomes] |
| rs34479127 | 0.89[EUR][1000 genomes] |
| rs34498712 | 0.94[EUR][1000 genomes] |
| rs4580811 | 0.91[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs6595019 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66726800 | 0.90[EUR][1000 genomes] |
| rs6874362 | 0.91[EUR][1000 genomes] |
| rs6875387 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7447805 | 0.90[EUR][1000 genomes] |
| rs7703141 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7708893 | 0.84[EUR][1000 genomes] |
| rs7710998 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7714567 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7716765 | 0.87[EUR][1000 genomes] |
| rs7735582 | 0.91[EUR][1000 genomes] |
| rs7737236 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015741 | chr5:116525936-116665270 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:116543000-116559000 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 2 | chr5:116551400-116554400 | Weak transcription | Stomach Mucosa | stomach |
