Variant report

Variant	rs7734532
Chromosome Location	chr5:118484804-118484805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118482899..118485109-chr5:118486246..118488385,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10052879	1.00[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10064311	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10065628	0.89[ASN][1000 genomes]
rs10071407	1.00[JPT][hapmap]
rs10071890	0.84[ASN][1000 genomes]
rs10477584	0.84[ASN][1000 genomes]
rs10900727	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11241489	0.95[ASN][1000 genomes]
rs11241490	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11241492	0.83[YRI][hapmap];0.82[ASN][1000 genomes]
rs11738702	0.80[EUR][1000 genomes]
rs12653870	1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs12658987	0.82[EUR][1000 genomes]
rs1394629	1.00[JPT][hapmap];0.81[AFR][1000 genomes]
rs299192	1.00[JPT][hapmap]
rs4286709	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4380699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4512152	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4533918	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4583917	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4895185	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs57278208	0.82[ASN][1000 genomes]
rs61279074	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62374136	0.80[EUR][1000 genomes]
rs6595174	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs6595178	0.83[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6863826	1.00[CHD][hapmap];0.84[GIH][hapmap];0.83[YRI][hapmap];0.82[ASN][1000 genomes]
rs6880622	0.89[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6889308	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6893733	1.00[JPT][hapmap]
rs6894997	1.00[JPT][hapmap]
rs7702867	1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs7713483	0.82[ASN][1000 genomes]
rs7720231	1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs7736400	1.00[JPT][hapmap]
rs9327087	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs9327093	1.00[JPT][hapmap]
rs9790885	1.00[CHD][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882774	chr5:118325429-118553470	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv462426	chr5:118465249-118621672	Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv599564	chr5:118465249-118621672	ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016595	chr5:118468658-118621672	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118412200-118522800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr5:118447400-118485400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:118450400-118496800	Weak transcription	Stomach Mucosa	stomach
4	chr5:118451200-118533400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:118453800-118522800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr5:118470000-118503200	Weak transcription	NH-A	brain
7	chr5:118472600-118487200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr5:118472800-118504000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr5:118472800-118505000	Weak transcription	HepG2	liver
10	chr5:118473000-118485400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:118473000-118497000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:118473400-118489200	Weak transcription	K562	blood
13	chr5:118473400-118496800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:118473800-118505000	Weak transcription	A549	lung
15	chr5:118478800-118491400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:118479000-118526000	Weak transcription	Fetal Brain Male	brain
17	chr5:118479400-118485000	Weak transcription	Fetal Stomach	stomach
18	chr5:118480000-118493000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:118480200-118490600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr5:118480600-118489800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr5:118481400-118485400	Weak transcription	Fetal Intestine Small	intestine
22	chr5:118481400-118486800	Strong transcription	Liver	Liver
23	chr5:118481600-118492800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:118481800-118486000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr5:118481800-118488800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr5:118481800-118493200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr5:118482000-118486600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:118482000-118491400	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr5:118482000-118492400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr5:118482200-118485400	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr5:118482200-118485600	Strong transcription	HSMM	muscle
32	chr5:118482200-118486000	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr5:118482200-118486400	Strong transcription	GM12878-XiMat	blood
34	chr5:118482200-118491600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr5:118482400-118486400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:118482400-118486600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr5:118482400-118486600	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr5:118482400-118486800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:118482400-118486800	Strong transcription	Fetal Thymus	thymus
40	chr5:118482400-118487000	Strong transcription	Primary B cells from cord blood	blood
41	chr5:118482400-118489000	Strong transcription	Placenta	Placenta
42	chr5:118482400-118490200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:118482400-118490600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr5:118482400-118491600	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr5:118482400-118491600	Strong transcription	Fetal Intestine Large	intestine
46	chr5:118482400-118492000	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr5:118482600-118485800	Strong transcription	Dnd41	blood
48	chr5:118482600-118486000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr5:118482600-118486400	Strong transcription	Primary hematopoietic stem cells	blood
50	chr5:118482600-118486400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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