Variant report

Variant	rs7734656
Chromosome Location	chr5:60422980-60422981
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10035893	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10043790	0.87[AMR][1000 genomes]
rs10044183	1.00[AMR][1000 genomes]
rs10046059	1.00[AMR][1000 genomes]
rs10050696	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10051150	1.00[AMR][1000 genomes]
rs10056202	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10056513	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10058726	1.00[AMR][1000 genomes]
rs10064129	1.00[AMR][1000 genomes]
rs10064292	0.87[AMR][1000 genomes]
rs10067476	0.87[AMR][1000 genomes]
rs10069623	1.00[AMR][1000 genomes]
rs10071845	0.87[AMR][1000 genomes]
rs10077508	1.00[AMR][1000 genomes]
rs10471504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110162	1.00[AMR][1000 genomes]
rs12696977	0.87[AMR][1000 genomes]
rs13353957	1.00[AMR][1000 genomes]
rs13355940	0.87[AMR][1000 genomes]
rs13356787	0.87[AMR][1000 genomes]
rs13360962	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13362092	0.87[AMR][1000 genomes]
rs2045678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2161199	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28411035	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28446443	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28507971	0.87[AMR][1000 genomes]
rs28534860	1.00[AMR][1000 genomes]
rs28582880	1.00[AMR][1000 genomes]
rs28781684	0.87[AMR][1000 genomes]
rs28816681	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28882716	1.00[AMR][1000 genomes]
rs28888995	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4647029	0.87[AMR][1000 genomes]
rs4647036	0.87[AMR][1000 genomes]
rs4647061	0.87[AMR][1000 genomes]
rs4647079	1.00[AMR][1000 genomes]
rs4647086	0.87[AMR][1000 genomes]
rs4647097	0.87[AMR][1000 genomes]
rs4647127	0.87[AMR][1000 genomes]
rs4647133	0.87[AMR][1000 genomes]
rs56791802	0.87[AMR][1000 genomes]
rs57818831	0.87[AMR][1000 genomes]
rs58495922	0.87[AMR][1000 genomes]
rs59030859	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6887938	1.00[AMR][1000 genomes]
rs6894736	1.00[AMR][1000 genomes]
rs73095990	0.87[AMR][1000 genomes]
rs73095991	1.00[AMR][1000 genomes]
rs73095993	0.87[AMR][1000 genomes]
rs73099808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73099809	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73099811	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73112244	0.87[AMR][1000 genomes]
rs73112254	1.00[AMR][1000 genomes]
rs73114340	1.00[AMR][1000 genomes]
rs7704436	0.87[AMR][1000 genomes]
rs7716539	1.00[AMR][1000 genomes]
rs7720240	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728655	0.87[AMR][1000 genomes]
rs7731888	1.00[AMR][1000 genomes]
rs7735610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9291698	1.00[AMR][1000 genomes]
rs9291699	0.87[AMR][1000 genomes]
rs9291703	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9968618	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949662	chr5:60047974-60488379	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv869065	chr5:60180775-60428760	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv598314	chr5:60374912-60459040	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60395400-60428200	Weak transcription	HSMMtube	muscle
2	chr5:60398800-60453800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:60417200-60449400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:60420000-60423200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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