Variant report

Variant	rs7734815
Chromosome Location	chr5:118232886-118232887
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10519564	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11954152	0.81[ASN][1000 genomes]
rs11959589	1.00[CHB][hapmap]
rs12109156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12109252	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12187606	1.00[JPT][hapmap]
rs1510971	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs17132677	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17144552	1.00[CHB][hapmap]
rs17144715	1.00[JPT][hapmap]
rs17144716	1.00[JPT][hapmap]
rs17144806	1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs17144824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17144836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17144872	1.00[CHB][hapmap]
rs17144877	1.00[CHB][hapmap]
rs17144885	1.00[CHB][hapmap]
rs17144893	1.00[CHB][hapmap]
rs17381247	1.00[CEU][hapmap]
rs17440213	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2029036	1.00[CEU][hapmap]
rs2084460	1.00[CHB][hapmap]
rs2217310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2377127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs34045550	0.92[ASN][1000 genomes]
rs4392657	1.00[CHB][hapmap]
rs4634381	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4895183	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs55671162	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs56191796	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56406364	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57581390	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59241413	0.85[ASN][1000 genomes]
rs6860946	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6862297	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs6863802	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes]
rs6870923	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs6871241	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs6874109	1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs6874399	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6880144	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6892437	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs73239053	0.81[ASN][1000 genomes]
rs73239055	0.85[ASN][1000 genomes]
rs73239065	0.95[EUR][1000 genomes]
rs73792419	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs767935	0.82[ASN][1000 genomes]
rs7706037	1.00[CHB][hapmap]
rs7710339	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs7721907	1.00[JPT][hapmap]
rs7724403	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7724753	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7737716	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv882773	chr5:118175640-118241854	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599563	chr5:118191798-118241854	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118216600-118244800	Weak transcription	Primary T cells from cord blood	blood
2	chr5:118218800-118240600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:118225000-118247000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
5	chr5:118227400-118270600	Weak transcription	Ovary	ovary
6	chr5:118231200-118233600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:118232400-118233400	Enhancers	Fetal Intestine Small	intestine
8	chr5:118232800-118233400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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