Variant report

Variant	rs7736461
Chromosome Location	chr5:119993410-119993411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10434767	1.00[JPT][hapmap]
rs10434768	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10434769	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463728	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10463729	0.91[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10519647	0.83[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10519648	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12657360	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1449144	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449145	0.83[EUR][1000 genomes]
rs17429630	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429749	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17501753	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17501872	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17501927	0.84[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1839246	0.86[ASN][1000 genomes]
rs2122190	0.91[CEU][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2405964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895272	0.82[EUR][1000 genomes]
rs4895273	0.81[EUR][1000 genomes]
rs4895274	0.83[ASN][1000 genomes]
rs4895275	0.83[ASN][1000 genomes]
rs59166325	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60807869	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62377807	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62377808	0.83[ASN][1000 genomes]
rs62377810	0.83[ASN][1000 genomes]
rs62377815	0.83[ASN][1000 genomes]
rs62377816	0.83[ASN][1000 genomes]
rs62377818	0.83[ASN][1000 genomes]
rs62377819	0.83[ASN][1000 genomes]
rs62379788	0.83[ASN][1000 genomes]
rs6871826	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781609	0.86[ASN][1000 genomes]
rs72794307	0.97[ASN][1000 genomes]
rs72794308	0.91[ASN][1000 genomes]
rs72794324	1.00[ASN][1000 genomes]
rs72794327	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72794329	1.00[ASN][1000 genomes]
rs72794336	1.00[ASN][1000 genomes]
rs72794341	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72794345	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72794351	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72798425	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031453	chr5:119843593-120393038	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv948613	chr5:119861955-119999008	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv599602	chr5:119866504-120023393	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv949499	chr5:119869763-119999008	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830464	chr5:119950090-120106717	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv599603	chr5:119953529-120317035	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv949415	chr5:119957645-120459183	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv830465	chr5:119973839-120151853	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1030613	chr5:119980213-120301205	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119953000-120021800	Weak transcription	HSMMtube	muscle
2	chr5:119967800-120012800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:119978600-120004600	Weak transcription	HSMM	muscle
4	chr5:119985400-120004600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:119985400-120011200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:119991000-120013800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:119991800-119993600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:119991800-119993600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:119992200-119993600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:119992600-119993600	Enhancers	Dnd41	blood
11	chr5:119992600-119993800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:119992600-119995600	Weak transcription	NH-A	brain
13	chr5:119993000-119993600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr5:119993000-119993600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:119993000-119993600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:119993000-119993800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:119993000-119993800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr5:119993000-119993800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:119993000-119993800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr5:119993000-119994000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr5:119993200-119998200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr5:119993200-120011400	Weak transcription	Osteobl	bone

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