Variant report

Variant	rs7738167
Chromosome Location	chr6:53590928-53590929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:53587433..53591147-chr6:53595586..53599292,4	MCF-7	breast:
2	chr6:53357555..53358402-chr6:53590290..53591260,4	K562	blood:
3	chr6:53590810..53593190-chr6:53597036..53600341,4	K562	blood:
4	chr6:53358288..53358988-chr6:53590034..53591204,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13220665	0.82[JPT][hapmap]
rs3000998	1.00[CHB][hapmap]
rs35709775	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4077760	0.86[CHB][hapmap]
rs4276504	0.82[CHB][hapmap]
rs4357137	0.82[CHB][hapmap]
rs4421195	0.89[EUR][1000 genomes]
rs4476827	0.85[CHB][hapmap]
rs4493745	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4518484	0.89[EUR][1000 genomes]
rs4715424	0.82[JPT][hapmap]
rs6905927	0.86[CHB][hapmap]
rs7744954	0.93[EUR][1000 genomes]
rs7756654	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7756771	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7756797	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7763012	0.89[CEU][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9382234	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2421836	chr6:53581398-53591120	Bivalent Enhancer Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53588200-53591000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:53588800-53594600	Enhancers	Placenta	Placenta
3	chr6:53589000-53591000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:53589000-53592600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:53589400-53594400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:53589600-53591200	Enhancers	Dnd41	blood
7	chr6:53589600-53593200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:53589600-53593600	Enhancers	HepG2	liver
9	chr6:53589800-53594800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:53589800-53595000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:53589800-53595000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:53589800-53599400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:53590000-53593200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:53590000-53593200	Weak transcription	Fetal Intestine Large	intestine
15	chr6:53590000-53593200	Weak transcription	Fetal Intestine Small	intestine
16	chr6:53590000-53595000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:53590200-53591000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr6:53590200-53595000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:53590400-53591000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:53590600-53591200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:53590600-53591200	Enhancers	Brain Cingulate Gyrus	brain
22	chr6:53590600-53591200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr6:53590800-53591000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:53590800-53591000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:53590800-53591000	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr6:53590800-53591000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr6:53590800-53591000	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr6:53590800-53591000	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr6:53590800-53591000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:53590800-53591000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:53590800-53591000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr6:53590800-53591000	Enhancers	Adipose Nuclei	Adipose
33	chr6:53590800-53591000	Enhancers	Brain Hippocampus Middle	brain
34	chr6:53590800-53591000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr6:53590800-53591000	Enhancers	Fetal Muscle Leg	muscle
36	chr6:53590800-53591000	Enhancers	Stomach Mucosa	stomach
37	chr6:53590800-53591000	Enhancers	NH-A	brain
38	chr6:53590800-53591200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr6:53590800-53591200	Enhancers	H1 Cell Line	embryonic stem cell
40	chr6:53590800-53591200	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr6:53590800-53591200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
42	chr6:53590800-53591200	Enhancers	Liver	Liver
43	chr6:53590800-53591200	Enhancers	Brain Angular Gyrus	brain
44	chr6:53590800-53591200	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr6:53590800-53591200	Enhancers	Colon Smooth Muscle	Colon
46	chr6:53590800-53591200	Enhancers	Left Ventricle	heart
47	chr6:53590800-53591200	Enhancers	Pancreas	Pancrea
48	chr6:53590800-53591200	Enhancers	A549	lung
49	chr6:53590800-53591200	Enhancers	HUVEC	blood vessel
50	chr6:53590800-53593200	Weak transcription	Fetal Kidney	kidney

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